fable.python
Class PeakSearchSpt

java.lang.Object
  fable.python.PeakSearchSpt

public class PeakSearchSpt
extends java.lang.Object

Author:

G. Suchet fable.peaksearch 9 janv. 08 This class represents the output of peaksearcher.

Constructor Summary

PeakSearchSpt(java.lang.String parentFileName)
f

Method Summary

void	addPeak(Peak p)
void	addPropertyChangeListener(org.eclipse.jface.util.IPropertyChangeListener listener) Register or remove listeners
void	concatPeaks(java.lang.String peak)
void	firechangeSortdirection(int comp)
void	fireChangeSorter(java.lang.String comp)
java.util.Vector<Peak>	getChildren()
java.lang.String	getFabioFileName()
FabioFile	getImageFile()
int	getNbPeaks()
java.lang.String	getParentFileName()
Peak	getPeak(int i)
int	getSize()
java.util.Vector<Peak>	getSortedpeaks()
java.util.Vector<java.lang.Float>	getTabChildren()
float	getTreshold() 14 janv.
void	initFabioFile(java.lang.String fullFileName)
boolean	isParsed()
void	parse()
void	removePropertyChangeListener(org.eclipse.jface.util.IPropertyChangeListener listener)
void	setComparator(java.lang.String Key, int dir)
void	setFabioFile(FabioFile object)
void	setFabioFileName(java.lang.String filename)
void	setKeys(java.lang.String listKeys) listKeys is: "Number_of_pixels Average_counts f s fc sc sig_f sig_s cov_fs" As it comes from sptParser
void	setKeys(java.lang.String[] listKeys) listKeys is: "Number_of_pixels Average_counts f s fc sc sig_f sig_s cov_fs" As it comes from sptParser
void	setNbPeaks(int pks)
void	setParentFileName(java.lang.String sptFile)
void	setParsed(boolean parsed)
void	setPeaks(java.lang.String blockWithAllPeaks)
void	setTreshold(float t)
java.lang.String	toString() add this method for treeviewer content provider

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

PeakSearchSpt

public PeakSearchSpt(java.lang.String parentFileName)

f

Parameters:

Filename -

Method Detail

setNbPeaks

public void setNbPeaks(int pks)

setTreshold

public void setTreshold(float t)

getNbPeaks

public int getNbPeaks()

getImageFile

public FabioFile getImageFile()

initFabioFile

public void initFabioFile(java.lang.String fullFileName)
                   throws FabioFileException

Throws:

FabioFileException

getTreshold

public float getTreshold()

14 janv. 08

Returns:

treshold ; value stored in output peaksearch header

addPeak

public void addPeak(Peak p)

getSortedpeaks

public java.util.Vector<Peak> getSortedpeaks()

setComparator

public void setComparator(java.lang.String Key,
                          int dir)

getPeak

public Peak getPeak(int i)

getSize

public int getSize()

getParentFileName

public java.lang.String getParentFileName()

getFabioFileName

public java.lang.String getFabioFileName()

Returns:

filenames

getChildren

public java.util.Vector<Peak> getChildren()

getTabChildren

public java.util.Vector<java.lang.Float> getTabChildren()

Returns:

an array containing a pair of [i=s, i+1=f], for 2d peaks for visible peaks (bshow=true).
Peaks should be already parsed.

toString

public java.lang.String toString()

add this method for treeviewer content provider

Overrides:

toString in class java.lang.Object

setKeys

public void setKeys(java.lang.String listKeys)

listKeys is: "Number_of_pixels Average_counts f s fc sc sig_f sig_s cov_fs" As it comes from sptParser

setKeys

public void setKeys(java.lang.String[] listKeys)

listKeys is: "Number_of_pixels Average_counts f s fc sc sig_f sig_s cov_fs" As it comes from sptParser

setPeaks

public void setPeaks(java.lang.String blockWithAllPeaks)

concatPeaks

public void concatPeaks(java.lang.String peak)

Parameters:

peak - this is one line coming from the parser 4194304 1040.879432 1025.619308 1024.586495 1025.797993 1025.442168 588.552309 588.380541 -0.000225

parse

public void parse()

isParsed

public boolean isParsed()

setParsed

public void setParsed(boolean parsed)

addPropertyChangeListener

public void addPropertyChangeListener(org.eclipse.jface.util.IPropertyChangeListener listener)

Register or remove listeners

removePropertyChangeListener

public void removePropertyChangeListener(org.eclipse.jface.util.IPropertyChangeListener listener)

fireChangeSorter

public void fireChangeSorter(java.lang.String comp)

firechangeSortdirection

public void firechangeSortdirection(int comp)

setParentFileName

public void setParentFileName(java.lang.String sptFile)

setFabioFileName

public void setFabioFileName(java.lang.String filename)

setFabioFile

public void setFabioFile(FabioFile object)