fable.python
Class Peak

java.lang.Object
  fable.python.Peak

All Implemented Interfaces:

java.lang.Comparable<java.lang.Object>, java.util.EventListener, org.eclipse.jface.util.IPropertyChangeListener

public class Peak
extends java.lang.Object
implements java.lang.Comparable<java.lang.Object>, org.eclipse.jface.util.IPropertyChangeListener

Author:

G. Suchet fable.peaksearch 9 janv. 08

This class describes a peak as found in an outputFile from peaksearch f(fast-->x) and s (slow -->y) are the position of the centre of mass of the peak in the uncorrected image (first moments of the intensity distributions in the blobs is the mean) fc and sc are the x and y positions corrected for spatial distortion. sig_f and sig_s are the second moments of the intensity distribution in the blob. Something like the width, but off by some factor of twopi perhaps cov_fs is the covariance (the third one of the second moments). It ranges between -1 and 1 with a value of 0 for a circular peak and +1 and -1 refering to elliptical shapes rotated by 90 degrees from each other.

Constructor Summary

Peak(java.lang.String[] keys, java.lang.String values)

Method Summary

int	compareTo(java.lang.Object other)
int	compareTo(java.lang.String key, java.lang.Object other)
java.lang.String	getF()
PeakSearchSpt	getParent() This method returns the PeakSearchSpt which belongs thi peak
java.lang.String	getS()
java.lang.String	getValue(java.lang.String k)
java.lang.String[]	getValues()
boolean	isVisible()
void	propertyChange(org.eclipse.jface.util.PropertyChangeEvent event)
void	setParent(PeakSearchSpt father)
void	show(boolean b)
java.lang.String	toString()

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Peak

public Peak(java.lang.String[] keys,
            java.lang.String values)

Parameters:

id -

number_of_pixels -

average_counts -

f -

s -

fc -

sc -

sig_f -

sig_s -

cov_fs -

Method Detail

setParent

public void setParent(PeakSearchSpt father)

show

public void show(boolean b)

isVisible

public boolean isVisible()

getF

public java.lang.String getF()

getS

public java.lang.String getS()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

getValues

public java.lang.String[] getValues()

getValue

public java.lang.String getValue(java.lang.String k)

compareTo

public int compareTo(java.lang.String key,
                     java.lang.Object other)

compareTo

public int compareTo(java.lang.Object other)

Specified by:

compareTo in interface java.lang.Comparable<java.lang.Object>

propertyChange

public void propertyChange(org.eclipse.jface.util.PropertyChangeEvent event)

Specified by:

propertyChange in interface org.eclipse.jface.util.IPropertyChangeListener

getParent

public PeakSearchSpt getParent()

This method returns the PeakSearchSpt which belongs thi peak

Returns: