Nabu 2025.2.0-dev5

Nabu is a tomography software used at the European Synchrotron

Quick links:

• Nabu development place
• Project maintainer: Pierre Paleo

Latest news:

• July 2025: Version 2025.1.0 released

Site map

• Home
• Getting started

  • Installation
  • Quick start
  • Nabu command line interface
  • Configuration file
  • About Nabu
• Using nabu

  • Nabu configuration parameters
  • Using nabu at ESRF
  • Advanced usage
• Features

  • Features overview
  • Phase Retrieval
  • Parameters estimation
  • Helical
  • Stitching

    • z-stitching
    • overlap kernels strategies
    • shift algorithms
    • alignment
    • normalization by sample
    • how to distribute stitching over slurm
    • design
    • data duplication
• Command-line tools

  • `nabu-test`: running the tests
  • Command-line tools
• Using nabu from python

  • Basic reconstruction with nabu
  • Using nabu from python to reconstruct a dataset with GPU
  • Reconstructing a complete scan using nabu and config file, from python
  • Demo about effect of the different stiching kernels
  • Nabu batch processing from a python script
• Developers

  • Architecture and design decisions
  • Processing: concepts and classes
  • Configuration file and processing options
  • Chunk processing
• API Reference

  • Index
  • nabu.app

    • Index
    • Bootstrap
    • Bootstrap stitching
    • Cast volume
    • Cli configs
    • Compare volumes
    • Composite cor
    • Create distortion map from poly
    • Diag to pix
    • Diag to rot
    • Double flatfield
    • Estimate motion
    • Generate header
    • Histogram
    • Multicor
    • Nx z splitter
    • Parse reconstruction log
    • Pcaflats
    • Prepare weights double
    • Reconstruct
    • Reconstruct helical
    • Reduce dark flat
    • Rotate
    • Shrink dataset
    • Stitching
    • Utils
    • Validator
  • nabu.cuda

    • Index
    • Kernel
    • Processing
    • Utils
  • nabu.estimation

    • Index
    • Alignment
    • Cor
    • Cor sino
    • Distortion
    • Focus
    • Motion
    • Tilt
    • Translation
    • Utils
  • nabu.io

    • Index
    • Cast volume
    • Detector distortion
    • Reader
    • Utils
    • Writer
  • nabu.misc

    • Index
    • Binning
    • Filters
    • Fourier filters
    • Padding
    • Utils
  • nabu.opencl

    • Index
    • Kernel
    • Memcpy
    • Processing
    • Utils
  • nabu.preproc

    • Index
    • Alignment
    • Ccd
    • Ccd cuda
    • Ctf
    • Ctf cuda
    • Distortion
    • Double flatfield
    • Double flatfield cuda
    • Double flatfield variable region
    • Flatfield
    • Flatfield cuda
    • Flatfield variable region
    • Phase
    • Phase cuda
    • Shift
    • Shift cuda
  • nabu.processing

    • Index
    • Azim
    • Convolution cuda
    • Fftshift
    • Fft base
    • Fft cuda
    • Fft opencl
    • Histogram
    • Histogram cuda
    • Kernel base
    • Medfilt cuda
    • Muladd
    • Muladd cuda
    • Padding base
    • Padding cuda
    • Padding opencl
    • Processing base
    • Roll opencl
    • Rotation
    • Rotation cuda
    • Transpose
    • Unsharp
    • Unsharp cuda
    • Unsharp opencl
  • nabu.reconstruction

    • Index
    • Astra
    • Cone
    • Fbp
    • Fbp base
    • Fbp opencl
    • Filtering
    • Filtering cuda
    • Filtering opencl
    • Hbp
    • Mlem
    • Projection
    • Reconstructor
    • Reconstructor cuda
    • Rings
    • Rings cuda
    • Sinogram
    • Sinogram cuda
    • Sinogram opencl
  • nabu.resources

    • Index
    • nabu.resources.cli

      • Index
    • nabu.resources.templates

      • Index
    • Cor
    • Dataset analyzer
    • Gpu
    • Logger
    • Nxflatfield
    • Utils
  • nabu.stitching

    • Index
    • nabu.stitching.stitcher

      • Index
      • nabu.stitching.stitcher.dumper

        • Index
        • Base
        • Postprocessing
        • Preprocessing
      • Base
      • Post processing
      • Pre processing
      • Single axis
      • Stitcher
      • Y stitcher
      • Z stitcher
    • nabu.stitching.utils

      • Index
      • Post processing
      • Utils
    • Alignment
    • Config
    • Definitions
    • Frame composition
    • Overlap
    • Sample normalization
    • Single axis stitching
    • Slurm utils
    • stitcher 2D
    • Y stitching
    • Z stitching
  • nabu.thirdparty

    • Index
    • Algotom convert sino
    • Pore3d deringer munch
    • Tomocupy remove stripe
    • Tomopy phase
    • Tomwer load flats darks
  • Tests
  • Testutils
  • Utils
• Release history

  • Version 2025.1.0
  • Version 2024.2.0
  • Version 2024.1.0
  • Version 2023.2.0
  • Version 2023.1.0
  • Version 2022.2.0
  • Version 2022.1.0
  • Version 2021.2.0
  • Version 2021.1.0
  • Version 2020.5.0
  • Version 2020.4.0
  • Version 2020.3.0
  • Version 2020.2.0