fable.framework.navigator.views
Class SampleNavigatorView

java.lang.Object
  org.eclipse.core.commands.common.EventManager
      org.eclipse.ui.part.WorkbenchPart
          org.eclipse.ui.part.ViewPart
              fable.framework.navigator.views.SampleNavigatorView

All Implemented Interfaces:

java.util.EventListener, org.eclipse.core.runtime.IAdaptable, org.eclipse.core.runtime.IExecutableExtension, org.eclipse.jface.util.IPropertyChangeListener, org.eclipse.ui.IPersistable, org.eclipse.ui.IViewPart, org.eclipse.ui.IWorkbenchPart, org.eclipse.ui.IWorkbenchPart2, org.eclipse.ui.IWorkbenchPart3, org.eclipse.ui.part.IWorkbenchPartOrientation

public class SampleNavigatorView
extends org.eclipse.ui.part.ViewPart
implements org.eclipse.jface.util.IPropertyChangeListener

Field Summary

static SampleController	controller This singleton is the model controller.
static java.lang.String	ID
static java.lang.String	INITIAL_DIR_DATA
static SampleNavigatorView	view Uniq instance of this view SampleNavigatorView.

Fields inherited from interface org.eclipse.ui.IWorkbenchPart

PROP_TITLE

Constructor Summary

SampleNavigatorView()

Method Summary

void	addDirectory(java.lang.String directory) This function is called when a directory is selected.
void	addFiles(java.lang.String[] files, java.lang.String directory) REPLACE FILEANDDIRECTORYDIALOG
void	addPropertyChangeListener(org.eclipse.jface.util.IPropertyChangeListener listener) 19 sept.
void	clearFiles() clear the table of files to process
void	createPartControl(org.eclipse.swt.widgets.Composite parent)
void	dispose()
Sample	getCurrentSample()
static SampleNavigatorView	getDefault() return default processing view
java.lang.String	getExperimentName()
java.lang.String	getFilter()
static java.lang.String	getInitialDirectory()
org.eclipse.core.runtime.jobs.Job	getJob()
java.lang.String	getSampleName()
java.util.Vector<java.lang.Integer>	getSelectedFilesIndex() Get the list of selected files in the sample navigator's file table and return the indices corresponding to their position in the vector of FabioFiles.
java.util.Vector<FabioFile>	getSortedfiles()
void	initSampleFilteredFiles(Sample sample) This method init fabio filtered peaks file in Sample object.
static void	loadInitialDirectory() restore the initial directory from the directory.xml memento store
java.io.File[]	loadSample(java.lang.String dir) 23 oct.
void	propertyChange(org.eclipse.jface.util.PropertyChangeEvent event) To show required fields when a property change in another view (for instance, launched when preprocessor is launched without any files)
void	removePropertyChangeListener(org.eclipse.jface.util.IPropertyChangeListener listener) 19 sept.
static void	saveInitialDirectory() save the initial directory in the directory.xml memento store
void	setExperimentAndSampleName(java.lang.String directory)
void	setExperimentName(java.lang.String experimentName)
void	setFilter(java.lang.String filter)
void	setFocus()
static void	setInitialDirectory(java.lang.String _initialDirectory)
void	setSampleName(java.lang.String sampleName)
void	setSelectedFiles(java.lang.String[] newFiles) update the list of selected files to display
void	updateDirectory() This function update a directory if new files have been added.

Methods inherited from class org.eclipse.ui.part.ViewPart

getViewSite, init, init, saveState, setInitializationData

Methods inherited from class org.eclipse.ui.part.WorkbenchPart

addPartPropertyListener, addPropertyListener, getAdapter, getContentDescription, getOrientation, getPartName, getPartProperties, getPartProperty, getSite, getTitle, getTitleImage, getTitleToolTip, removePartPropertyListener, removePropertyListener, setPartProperty, showBusy

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.eclipse.ui.IWorkbenchPart

addPropertyListener, getSite, getTitle, getTitleImage, getTitleToolTip, removePropertyListener

Methods inherited from interface org.eclipse.core.runtime.IAdaptable

getAdapter

Field Detail

ID

public static final java.lang.String ID

See Also:

Constant Field Values

INITIAL_DIR_DATA

public static final java.lang.String INITIAL_DIR_DATA

See Also:

Constant Field Values

view

public static SampleNavigatorView view

Uniq instance of this view SampleNavigatorView.

controller

public static SampleController controller

This singleton is the model controller.

Constructor Detail

SampleNavigatorView

public SampleNavigatorView()

Method Detail

createPartControl

public void createPartControl(org.eclipse.swt.widgets.Composite parent)

Specified by:

createPartControl in interface org.eclipse.ui.IWorkbenchPart

Specified by:

createPartControl in class org.eclipse.ui.part.WorkbenchPart

getSelectedFilesIndex

public java.util.Vector<java.lang.Integer> getSelectedFilesIndex()

Get the list of selected files in the sample navigator's file table and return the indices corresponding to their position in the vector of FabioFiles.

Returns:

- list of file indices as an array of int

getDefault

public static SampleNavigatorView getDefault()

return default processing view

Returns:

default processing view

setFocus

public void setFocus()

Specified by:

setFocus in interface org.eclipse.ui.IWorkbenchPart

Specified by:

setFocus in class org.eclipse.ui.part.WorkbenchPart

setSelectedFiles

public void setSelectedFiles(java.lang.String[] newFiles)

update the list of selected files to display

Parameters:

String - [] newFiles - list of selected files

addPropertyChangeListener

public void addPropertyChangeListener(org.eclipse.jface.util.IPropertyChangeListener listener)

19 sept. 07

Parameters:

listener -

removePropertyChangeListener

public void removePropertyChangeListener(org.eclipse.jface.util.IPropertyChangeListener listener)

19 sept. 07

Parameters:

listener -

clearFiles

public void clearFiles()

clear the table of files to process

loadSample

public java.io.File[] loadSample(java.lang.String dir)

23 oct. 07

Parameters:

dir -

getExperimentName

public java.lang.String getExperimentName()

setExperimentName

public void setExperimentName(java.lang.String experimentName)

getSampleName

public java.lang.String getSampleName()

setSampleName

public void setSampleName(java.lang.String sampleName)

setExperimentAndSampleName

public void setExperimentAndSampleName(java.lang.String directory)

addFiles

public void addFiles(java.lang.String[] files,
                     java.lang.String directory)

REPLACE FILEANDDIRECTORYDIALOG

updateDirectory

public void updateDirectory()

This function update a directory if new files have been added. New since 29/07/2008.

addDirectory

public void addDirectory(java.lang.String directory)

This function is called when a directory is selected.

It gets all files with the type set in preferences to fill left table. If a filter exists and if the user has checked "set filter for all samples" a filter on the name is set.

Parameters:

directory -

dispose

public void dispose()

Specified by:

dispose in interface org.eclipse.ui.IWorkbenchPart

Overrides:

dispose in class org.eclipse.ui.part.WorkbenchPart

getInitialDirectory

public static java.lang.String getInitialDirectory()

setInitialDirectory

public static void setInitialDirectory(java.lang.String _initialDirectory)

loadInitialDirectory

public static void loadInitialDirectory()

restore the initial directory from the directory.xml memento store

saveInitialDirectory

public static void saveInitialDirectory()

save the initial directory in the directory.xml memento store

propertyChange

public void propertyChange(org.eclipse.jface.util.PropertyChangeEvent event)

To show required fields when a property change in another view (for instance, launched when preprocessor is launched without any files)

Specified by:

propertyChange in interface org.eclipse.jface.util.IPropertyChangeListener

Parameters:

event -

getCurrentSample

public Sample getCurrentSample()

getJob

public org.eclipse.core.runtime.jobs.Job getJob()

getFilter

public java.lang.String getFilter()

setFilter

public void setFilter(java.lang.String filter)

initSampleFilteredFiles

public void initSampleFilteredFiles(Sample sample)

This method init fabio filtered peaks file in Sample object.

getSortedfiles

public java.util.Vector<FabioFile> getSortedfiles()