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"""This module adds convenient functions to use plot widgets from the console.
"""
__authors__ = ["T. Vincent"]
__license__ = "MIT"
__date__ = "06/11/2018"
from collections import abc
import logging
import weakref
import numpy
from ..utils.weakref import WeakList
from ..gui import qt
from ..gui.plot import Plot1D, Plot2D, ScatterView
from ..gui.plot import items
from ..gui import colors
from ..gui.plot.tools import roi
from ..gui.plot.items import roi as roi_items
from ..gui.plot.tools.toolbars import InteractiveModeToolBar
_logger = logging.getLogger(__name__)
_plots = WeakList()
"""List of widgets created through plot and imshow"""
[docs]
def plot(*args, **kwargs):
"""
Plot curves in a :class:`~silx.gui.plot.PlotWindow.Plot1D` widget.
How to use:
>>> from silx import sx
>>> import numpy
Plot a single curve given some values:
>>> values = numpy.random.random(100)
>>> plot_1curve = sx.plot(values, title='Random data')
Plot a single curve given the x and y values:
>>> angles = numpy.linspace(0, numpy.pi, 100)
>>> sin_a = numpy.sin(angles)
>>> plot_sinus = sx.plot(angles, sin_a, xlabel='angle (radian)', ylabel='sin(a)')
Plot many curves by giving a 2D array, provided xn, yn arrays:
>>> plot_curves = sx.plot(x0, y0, x1, y1, x2, y2, ...)
Plot curve with style giving a style string:
>>> plot_styled = sx.plot(x0, y0, 'ro-', x1, y1, 'b.')
Supported symbols:
- 'o' circle
- '.' point
- ',' pixel
- '+' cross
- 'x' x-cross
- 'd' diamond
- 's' square
Supported types of line:
- ' ' no line
- '-' solid line
- '--' dashed line
- '-.' dash-dot line
- ':' dotted line
If provided, the names arguments color, linestyle, linewidth and marker
override any style provided to a curve.
This function supports a subset of `matplotlib.pyplot.plot
<http://matplotlib.org/api/pyplot_api.html#matplotlib.pyplot.plot>`_
arguments.
:param str color: Color to use for all curves (default: None)
:param str linestyle: Type of line to use for all curves (default: None)
:param float linewidth: With of all the curves (default: 1)
:param str marker: Symbol to use for all the curves (default: None)
:param str title: The title of the Plot widget (default: None)
:param str xlabel: The label of the X axis (default: None)
:param str ylabel: The label of the Y axis (default: None)
:return: The widget plotting the curve(s)
:rtype: silx.gui.plot.Plot1D
"""
plt = Plot1D()
if "title" in kwargs:
plt.setGraphTitle(kwargs["title"])
if "xlabel" in kwargs:
plt.getXAxis().setLabel(kwargs["xlabel"])
if "ylabel" in kwargs:
plt.getYAxis().setLabel(kwargs["ylabel"])
color = kwargs.get("color")
linestyle = kwargs.get("linestyle")
linewidth = kwargs.get("linewidth")
marker = kwargs.get("marker")
# Parse args and store curves as (x, y, style string)
args = list(args)
curves = []
while args:
first_arg = args.pop(0) # Process an arg
if len(args) == 0:
# Last curve defined as (y,)
curves.append((numpy.arange(len(first_arg)), first_arg, None))
else:
second_arg = args.pop(0)
if isinstance(second_arg, str):
# curve defined as (y, style)
y = first_arg
style = second_arg
curves.append((numpy.arange(len(y)), y, style))
else: # second_arg must be an array-like
x = first_arg
y = second_arg
if len(args) >= 1 and isinstance(args[0], str):
# Curve defined as (x, y, style)
style = args.pop(0)
curves.append((x, y, style))
else:
# Curve defined as (x, y)
curves.append((x, y, None))
for index, curve in enumerate(curves):
x, y, style = curve
# Default style
curve_symbol, curve_linestyle, curve_color = None, None, None
# Parse style
if style:
# Handle color first
possible_colors = [c for c in colors.COLORDICT if style.startswith(c)]
if possible_colors: # Take the longest string matching a color name
curve_color = possible_colors[0]
for c in possible_colors[1:]:
if len(c) > len(curve_color):
curve_color = c
style = style[len(curve_color) :]
if style:
# Run twice to handle inversion symbol/linestyle
for _i in range(2):
# Handle linestyle
for line in (" ", "--", "-", "-.", ":"):
if style.endswith(line):
curve_linestyle = line
style = style[: -len(line)]
break
# Handle symbol
for curve_marker in ("o", ".", ",", "+", "x", "d", "s"):
if style.endswith(curve_marker):
curve_symbol = style[-1]
style = style[:-1]
break
# As in matplotlib, marker, linestyle and color override other style
plt.addCurve(
x,
y,
legend=("curve_%d" % index),
symbol=marker or curve_symbol,
linestyle=linestyle or curve_linestyle,
linewidth=linewidth,
color=color or curve_color,
)
plt.show()
_plots.insert(0, plt)
return plt
[docs]
def imshow(
data=None,
cmap=None,
norm=colors.Colormap.LINEAR,
vmin=None,
vmax=None,
aspect=False,
origin="upper",
scale=(1.0, 1.0),
title="",
xlabel="X",
ylabel="Y",
):
"""
Plot an image in a :class:`~silx.gui.plot.PlotWindow.Plot2D` widget.
How to use:
>>> from silx import sx
>>> import numpy
>>> data = numpy.random.random(1024 * 1024).reshape(1024, 1024)
>>> plt = sx.imshow(data, title='Random data')
By default, the image origin is displayed in the upper left
corner of the plot. To invert the Y axis, and place the image origin
in the lower left corner of the plot, use the *origin* parameter:
>>> plt = sx.imshow(data, origin='lower')
This function supports a subset of `matplotlib.pyplot.imshow
<http://matplotlib.org/api/pyplot_api.html#matplotlib.pyplot.imshow>`_
arguments.
:param data: data to plot as an image
:type data: numpy.ndarray-like with 2 dimensions
:param str cmap: The name of the colormap to use for the plot. It also
supports a numpy array containing a RGB LUT, or a `colors.Colormap`
instance.
:param str norm: The normalization of the colormap:
'linear' (default) or 'log'
:param float vmin: The value to use for the min of the colormap
:param float vmax: The value to use for the max of the colormap
:param bool aspect: True to keep aspect ratio (Default: False)
:param origin: Either image origin as the Y axis orientation:
'upper' (default) or 'lower'
or the coordinates (ox, oy) of the image origin in the plot.
:type origin: str or 2-tuple of floats
:param scale: (sx, sy) The scale of the image in the plot
(i.e., the size of the image's pixel in plot coordinates)
:type scale: 2-tuple of floats
:param str title: The title of the Plot widget
:param str xlabel: The label of the X axis
:param str ylabel: The label of the Y axis
:return: The widget plotting the image
:rtype: silx.gui.plot.Plot2D
"""
plt = Plot2D()
plt.setGraphTitle(title)
plt.getXAxis().setLabel(xlabel)
plt.getYAxis().setLabel(ylabel)
# Update default colormap with input parameters
colormap = plt.getDefaultColormap()
if isinstance(cmap, colors.Colormap):
colormap = cmap
plt.setDefaultColormap(colormap)
elif isinstance(cmap, numpy.ndarray):
colormap.setColors(cmap)
elif cmap is not None:
colormap.setName(cmap)
assert norm in colors.Colormap.NORMALIZATIONS
colormap.setNormalization(norm)
colormap.setVMin(vmin)
colormap.setVMax(vmax)
# Handle aspect
if aspect in (None, False, "auto", "normal"):
plt.setKeepDataAspectRatio(False)
elif aspect in (True, "equal") or aspect == 1:
plt.setKeepDataAspectRatio(True)
else:
_logger.warning("imshow: Unhandled aspect argument: %s", str(aspect))
# Handle matplotlib-like origin
if origin in ("upper", "lower"):
plt.setYAxisInverted(origin == "upper")
origin = 0.0, 0.0 # Set origin to the definition of silx
if data is not None:
data = numpy.array(data, copy=True)
assert data.ndim in (2, 3) # data or RGB(A)
if data.ndim == 3:
assert data.shape[-1] in (3, 4) # RGB(A) image
plt.addImage(data, origin=origin, scale=scale)
plt.show()
_plots.insert(0, plt)
return plt
[docs]
def scatter(
x=None,
y=None,
value=None,
size=None,
marker=None,
cmap=None,
norm=colors.Colormap.LINEAR,
vmin=None,
vmax=None,
):
"""
Plot scattered data in a :class:`~silx.gui.plot.ScatterView` widget.
How to use:
>>> from silx import sx
>>> import numpy
>>> x = numpy.random.random(100)
>>> y = numpy.random.random(100)
>>> values = numpy.random.random(100)
>>> plt = sx.scatter(x, y, values, cmap='viridis')
Supported symbols:
- 'o' circle
- '.' point
- ',' pixel
- '+' cross
- 'x' x-cross
- 'd' diamond
- 's' square
This function supports a subset of `matplotlib.pyplot.scatter
<http://matplotlib.org/api/pyplot_api.html#matplotlib.pyplot.scatter>`_
arguments.
:param numpy.ndarray x: 1D array-like of x coordinates
:param numpy.ndarray y: 1D array-like of y coordinates
:param numpy.ndarray value: 1D array-like of data values
:param float size: Size^2 of the markers
:param str marker: Symbol used to represent the points
:param str cmap: The name of the colormap to use for the plot
:param str norm: The normalization of the colormap:
'linear' (default) or 'log'
:param float vmin: The value to use for the min of the colormap
:param float vmax: The value to use for the max of the colormap
:return: The widget plotting the scatter plot
:rtype: silx.gui.plot.ScatterView.ScatterView
"""
plt = ScatterView()
# Update default colormap with input parameters
colormap = plt.getPlotWidget().getDefaultColormap()
if cmap is not None:
colormap.setName(cmap)
assert norm in colors.Colormap.NORMALIZATIONS
colormap.setNormalization(norm)
colormap.setVMin(vmin)
colormap.setVMax(vmax)
plt.getPlotWidget().setDefaultColormap(colormap)
if x is not None and y is not None: # Add a scatter plot
x = numpy.array(x, copy=True).reshape(-1)
y = numpy.array(y, copy=True).reshape(-1)
assert len(x) == len(y)
if value is None:
value = numpy.ones(len(x), dtype=numpy.float32)
elif isinstance(value, abc.Iterable):
value = numpy.array(value, copy=True).reshape(-1)
assert len(x) == len(value)
else:
value = numpy.ones(len(x), dtype=numpy.float64) * value
plt.setData(x, y, value)
item = plt.getScatterItem()
if marker is not None:
item.setSymbol(marker)
if size is not None:
item.setSymbolSize(numpy.sqrt(size))
plt.resetZoom()
plt.show()
_plots.insert(0, plt.getPlotWidget())
return plt
class _GInputResult(tuple):
"""Object storing :func:`ginput` result
:param position: Selected point coordinates in the plot (x, y)
:param Item item: Plot item under the selected position
:param indices: Selected indices in the data of the item.
For a curve it is a list of indices, for an image it is (row, column)
:param data: Value of data at selected indices.
For a curve it is an array of values, for an image it is a single value
"""
def __new__(cls, position, item, indices, data):
return super(_GInputResult, cls).__new__(cls, position)
def __init__(self, position, item, indices, data):
self._itemRef = weakref.ref(item) if item is not None else None
self._indices = numpy.array(indices, copy=True)
if isinstance(data, abc.Iterable):
self._data = numpy.array(data, copy=True)
else:
self._data = data
def getItem(self):
"""Returns the item at the selected position if any.
:return: plot item under the selected postion.
It is None if there was no item at that position or if
it is no more in the plot.
:rtype: silx.gui.plot.items.Item"""
return None if self._itemRef is None else self._itemRef()
def getIndices(self):
"""Returns indices in data array at the select position
:return: 1D array of indices for curve and (row, column) for images
:rtype: numpy.ndarray
"""
return numpy.array(self._indices, copy=True)
def getData(self):
"""Returns data value at the selected position.
For curves, an array of (x, y) values close to the point is returned.
For images, either a single value or a RGB(A) array is returned.
:return: 2D array of (x, y) data values for curves (Nx2),
a single value for data images and RGB(A) array for images.
"""
if isinstance(self._data, numpy.ndarray):
return numpy.array(self._data, copy=True)
else:
return self._data
class _GInputHandler(roi.InteractiveRegionOfInterestManager):
"""Implements :func:`ginput`
:param PlotWidget plot:
:param int n: Max number of points to request
:param float timeout: Timeout in seconds
"""
def __init__(self, plot, n, timeout):
super(_GInputHandler, self).__init__(plot)
self._timeout = timeout
self.__selections = {}
window = plot.window() # Retrieve window containing PlotWidget
statusBar = window.statusBar()
self.sigMessageChanged.connect(statusBar.showMessage)
self.setMaxRois(n)
self.setValidationMode(self.ValidationMode.AUTO_ENTER)
self.sigRoiAdded.connect(self.__added)
self.sigRoiAboutToBeRemoved.connect(self.__removed)
def exec(self):
"""Request user inputs
:return: List of selection points information
"""
plot = self.parent()
if plot is None:
return
window = plot.window() # Retrieve window containing PlotWidget
# Add ROI point interactive mode action
for toolbar in window.findChildren(qt.QToolBar):
if isinstance(toolbar, InteractiveModeToolBar):
break
else: # Add a toolbar
toolbar = qt.QToolBar()
window.addToolBar(toolbar)
toolbar.addAction(self.getInteractionModeAction(roi_items.PointROI))
super(_GInputHandler, self).exec(
roiClass=roi_items.PointROI, timeout=self._timeout
)
if isinstance(toolbar, InteractiveModeToolBar):
toolbar.removeAction(self.getInteractionModeAction(roi_items.PointROI))
else:
toolbar.setParent(None)
return tuple(self.__selections.values())
def exec_(self): # Qt5-like compatibility
return self.exec()
def __updateSelection(self, roi):
"""Perform picking and update selection list
:param RegionOfInterest roi:
"""
plot = self.parent()
if plot is None:
return # No plot, abort
if not isinstance(roi, roi_items.PointROI):
# Only handle points
raise RuntimeError("Unexpected item")
x, y = roi.getPosition()
xPixel, yPixel = plot.dataToPixel(x, y, axis="left", check=False)
# Pick item at selected position
pickingResult = plot._pickTopMost(
xPixel,
yPixel,
lambda item: isinstance(item, (items.ImageBase, items.Curve)),
)
if pickingResult is None:
result = _GInputResult(
(x, y), item=None, indices=numpy.array((), dtype=int), data=None
)
else:
item = pickingResult.getItem()
indices = pickingResult.getIndices(copy=True)
if isinstance(item, items.Curve):
xData = item.getXData(copy=False)[indices]
yData = item.getYData(copy=False)[indices]
result = _GInputResult(
(x, y),
item=item,
indices=indices,
data=numpy.array((xData, yData)).T,
)
elif isinstance(item, items.ImageBase):
row, column = indices[0][0], indices[1][0]
data = item.getData(copy=False)[row, column]
result = _GInputResult(
(x, y), item=item, indices=(row, column), data=data
)
self.__selections[roi] = result
def __added(self, roi):
"""Handle new ROI added
:param RegionOfInterest roi:
"""
if isinstance(roi, roi_items.PointROI):
# Only handle points
roi.setName("%d" % len(self.__selections))
self.__updateSelection(roi)
roi.sigRegionChanged.connect(self.__regionChanged)
def __removed(self, roi):
"""Handle ROI removed"""
if self.__selections.pop(roi, None) is not None:
roi.sigRegionChanged.disconnect(self.__regionChanged)
def __regionChanged(self):
"""Handle update of a ROI"""
roi = self.sender()
self.__updateSelection(roi)
