Source code for silx.gui.plot.items.core

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"""This module provides the base class for items of the :class:`Plot`.
"""
from __future__ import annotations


__authors__ = ["T. Vincent"]
__license__ = "MIT"
__date__ = "08/12/2020"

from collections import abc
from copy import deepcopy
import logging
import enum
import numbers
from typing import Optional, Tuple, Union
import weakref

import numpy

from ....utils.proxy import docstring
from ....utils.enum import Enum as _Enum
from ....math.combo import min_max
from ... import qt
from ... import colors
from ...colors import Colormap, _Colormappable
from ._pick import PickingResult

from silx import config
from silx._utils import NP_OPTIONAL_COPY


_logger = logging.getLogger(__name__)


[docs] @enum.unique class ItemChangedType(enum.Enum): """Type of modification provided by :attr:`Item.sigItemChanged` signal.""" # Private setters and setInfo are not emitting sigItemChanged signal. # Signals to consider: # COLORMAP_SET emitted when setColormap is called but not forward colormap object signal # CURRENT_COLOR_CHANGED emitted current color changed because highlight changed, # highlighted color changed or color changed depending on hightlight state. VISIBLE = "visibleChanged" """Item's visibility changed flag.""" ZVALUE = "zValueChanged" """Item's Z value changed flag.""" COLORMAP = ( "colormapChanged" # Emitted when set + forward events from the colormap object ) """Item's colormap changed flag. This is emitted both when setting a new colormap and when the current colormap object is updated. """ SYMBOL = "symbolChanged" """Item's symbol changed flag.""" SYMBOL_SIZE = "symbolSizeChanged" """Item's symbol size changed flag.""" LINE_WIDTH = "lineWidthChanged" """Item's line width changed flag.""" LINE_STYLE = "lineStyleChanged" """Item's line style changed flag.""" COLOR = "colorChanged" """Item's color changed flag.""" LINE_BG_COLOR = "lineBgColorChanged" # Deprecated, use LINE_GAP_COLOR LINE_GAP_COLOR = "lineGapColorChanged" """Item's dashed line gap color changed flag.""" YAXIS = "yAxisChanged" """Item's Y axis binding changed flag.""" FILL = "fillChanged" """Item's fill changed flag.""" ALPHA = "alphaChanged" """Item's transparency alpha changed flag.""" DATA = "dataChanged" """Item's data changed flag""" MASK = "maskChanged" """Item's mask changed flag""" HIGHLIGHTED = "highlightedChanged" """Item's highlight state changed flag.""" HIGHLIGHTED_COLOR = "highlightedColorChanged" """Deprecated, use HIGHLIGHTED_STYLE instead.""" HIGHLIGHTED_STYLE = "highlightedStyleChanged" """Item's highlighted style changed flag.""" SCALE = "scaleChanged" """Item's scale changed flag.""" TEXT = "textChanged" """Item's text changed flag.""" POSITION = "positionChanged" """Item's position changed flag. This is emitted when a marker position changed and when an image origin changed. """ OVERLAY = "overlayChanged" """Item's overlay state changed flag.""" VISUALIZATION_MODE = "visualizationModeChanged" """Item's visualization mode changed flag.""" COMPLEX_MODE = "complexModeChanged" """Item's complex data visualization mode changed flag.""" NAME = "nameChanged" """Item's name changed flag.""" EDITABLE = "editableChanged" """Item's editable state changed flags.""" SELECTABLE = "selectableChanged" """Item's selectable state changed flags.""" FONT = "fontChanged" """Item's text font changed flag.""" BACKGROUND_COLOR = "backgroundColorChanged" """Item's text background color changed flag."""
[docs] class Item(qt.QObject): """Description of an item of the plot""" _DEFAULT_Z_LAYER = 0 """Default layer for overlay rendering""" _DEFAULT_SELECTABLE = False """Default selectable state of items""" sigItemChanged = qt.Signal(object) """Signal emitted when the item has changed. It provides a flag describing which property of the item has changed. See :class:`ItemChangedType` for flags description. """ _sigVisibleBoundsChanged = qt.Signal() """Signal emitted when the visible extent of the item in the plot has changed. This signal is emitted only if visible extent tracking is enabled (see :meth:`_setVisibleBoundsTracking`). """ def __init__(self): qt.QObject.__init__(self) self._dirty = True self._plotRef = None self._visible = True self._selectable = self._DEFAULT_SELECTABLE self._z = self._DEFAULT_Z_LAYER self._info = None self._xlabel = None self._ylabel = None self.__name = "" self.__visibleBoundsTracking = False self.__previousVisibleBounds = None self._backendRenderer = None
[docs] def getPlot(self): """Returns the ~silx.gui.plot.PlotWidget this item belongs to. :rtype: Union[~silx.gui.plot.PlotWidget,None] """ return None if self._plotRef is None else self._plotRef()
def _setPlot(self, plot): """Set the plot this item belongs to. WARNING: This should only be called from the Plot. :param Union[~silx.gui.plot.PlotWidget,None] plot: The Plot instance. """ if plot is not None and self._plotRef is not None: raise RuntimeError("Trying to add a node at two places.") self.__disconnectFromPlotWidget() self._plotRef = None if plot is None else weakref.ref(plot) self.__connectToPlotWidget() self._updated()
[docs] def getBounds(self): # TODO return a Bounds object rather than a tuple """Returns the bounding box of this item in data coordinates :returns: (xmin, xmax, ymin, ymax) or None :rtype: 4-tuple of float or None """ return self._getBounds()
def _getBounds(self): """:meth:`getBounds` implementation to override by sub-class""" return None
[docs] def isVisible(self): """True if item is visible, False otherwise :rtype: bool """ return self._visible
[docs] def setVisible(self, visible): """Set visibility of item. :param bool visible: True to display it, False otherwise """ visible = bool(visible) if visible != self._visible: self._visible = visible # When visibility has changed, always mark as dirty self._updated(ItemChangedType.VISIBLE, checkVisibility=False) if visible: self._visibleBoundsChanged()
[docs] def isOverlay(self): """Return true if item is drawn as an overlay. :rtype: bool """ return False
[docs] def getName(self): """Returns the name of the item which is used as legend. :rtype: str """ return self.__name
[docs] def setName(self, name): """Set the name of the item which is used as legend. :param str name: New name of the item :raises RuntimeError: If item belongs to a PlotWidget. """ name = str(name) if self.__name != name: if self.getPlot() is not None: raise RuntimeError("Cannot change name while item is in a PlotWidget") self.__name = name self._updated(ItemChangedType.NAME)
def getLegend(self): # Replaced by getName for API consistency return self.getName()
[docs] def isSelectable(self): """Returns true if item is selectable (bool)""" return self._selectable
def _setSelectable(self, selectable): # TODO support update """Set whether item is selectable or not. This is private for now as change is not handled. :param bool selectable: True to make item selectable """ self._selectable = bool(selectable)
[docs] def getZValue(self): """Returns the layer on which to draw this item (int)""" return self._z
def setZValue(self, z): z = int(z) if z is not None else self._DEFAULT_Z_LAYER if z != self._z: self._z = z self._updated(ItemChangedType.ZVALUE)
[docs] def getInfo(self, copy=True): """Returns the info associated to this item :param bool copy: True to get a deepcopy, False otherwise. """ return deepcopy(self._info) if copy else self._info
def setInfo(self, info, copy=True): if copy: info = deepcopy(info) self._info = info
[docs] def getVisibleBounds(self) -> Optional[Tuple[float, float, float, float]]: """Returns visible bounds of the item bounding box in the plot area. :returns: (xmin, xmax, ymin, ymax) in data coordinates of the visible area or None if item is not visible in the plot area. :rtype: Union[List[float],None] """ plot = self.getPlot() bounds = self.getBounds() if plot is None or bounds is None or not self.isVisible(): return None xmin, xmax = numpy.clip(bounds[:2], *plot.getXAxis().getLimits()) ymin, ymax = numpy.clip( bounds[2:], *plot.getYAxis(self.__getYAxis()).getLimits() ) if xmin == xmax or ymin == ymax: # Outside the plot area return None else: return xmin, xmax, ymin, ymax
def _isVisibleBoundsTracking(self) -> bool: """Returns True if visible bounds changes are tracked. When enabled, :attr:`_sigVisibleBoundsChanged` is emitted upon changes. :rtype: bool """ return self.__visibleBoundsTracking def _setVisibleBoundsTracking(self, enable: bool) -> None: """Set whether or not to track visible bounds changes. :param bool enable: """ if enable != self.__visibleBoundsTracking: self.__disconnectFromPlotWidget() self.__previousVisibleBounds = None self.__visibleBoundsTracking = enable self.__connectToPlotWidget() def __getYAxis(self) -> str: """Returns current Y axis ('left' or 'right')""" return self.getYAxis() if isinstance(self, YAxisMixIn) else "left" def __connectToPlotWidget(self) -> None: """Connect to PlotWidget signals and install event filter""" if not self._isVisibleBoundsTracking(): return plot = self.getPlot() if plot is not None: for axis in (plot.getXAxis(), plot.getYAxis(self.__getYAxis())): axis.sigLimitsChanged.connect(self._visibleBoundsChanged) plot.installEventFilter(self) self._visibleBoundsChanged() def __disconnectFromPlotWidget(self) -> None: """Disconnect from PlotWidget signals and remove event filter""" if not self._isVisibleBoundsTracking(): return plot = self.getPlot() if plot is not None: for axis in (plot.getXAxis(), plot.getYAxis(self.__getYAxis())): axis.sigLimitsChanged.disconnect(self._visibleBoundsChanged) plot.removeEventFilter(self) def _visibleBoundsChanged(self, *args) -> None: """Check if visible extent actually changed and emit signal""" if not self._isVisibleBoundsTracking(): return # No visible extent tracking plot = self.getPlot() if plot is None or not plot.isVisible(): return # No plot or plot not visible extent = self.getVisibleBounds() if extent != self.__previousVisibleBounds: self.__previousVisibleBounds = extent self._sigVisibleBoundsChanged.emit()
[docs] def eventFilter(self, watched, event): """Event filter to handle PlotWidget show events""" if watched is self.getPlot() and event.type() == qt.QEvent.Show: self._visibleBoundsChanged() return super().eventFilter(watched, event)
def _updated(self, event=None, checkVisibility=True): """Mark the item as dirty (i.e., needing update). This also triggers Plot.replot. :param event: The event to send to :attr:`sigItemChanged` signal. :param bool checkVisibility: True to only mark as dirty if visible, False to always mark as dirty. """ if not checkVisibility or self.isVisible(): if not self._dirty: self._dirty = True # TODO: send event instead of explicit call plot = self.getPlot() if plot is not None: plot._itemRequiresUpdate(self) if event is not None: self.sigItemChanged.emit(event) def _update(self, backend): """Called by Plot to update the backend for this item. This is meant to be called asynchronously from _updated. This optimizes the number of call to _update. :param backend: The backend to update """ if self._dirty: # Remove previous renderer from backend if any self._removeBackendRenderer(backend) # If not visible, do not add renderer to backend if self.isVisible(): self._backendRenderer = self._addBackendRenderer(backend) self._dirty = False def _addBackendRenderer(self, backend): """Override in subclass to add specific backend renderer. :param BackendBase backend: The backend to update :return: The renderer handle to store or None if no renderer in backend """ return None def _removeBackendRenderer(self, backend): """Override in subclass to remove specific backend renderer. :param BackendBase backend: The backend to update """ if self._backendRenderer is not None: backend.remove(self._backendRenderer) self._backendRenderer = None
[docs] def pick(self, x, y): """Run picking test on this item :param float x: The x pixel coord where to pick. :param float y: The y pixel coord where to pick. :return: None if not picked, else the picked position information :rtype: Union[None,PickingResult] """ if not self.isVisible() or self._backendRenderer is None: return None plot = self.getPlot() if plot is None: return None indices = plot._backend.pickItem(x, y, self._backendRenderer) if indices is None: return None else: return PickingResult(self, indices)
class DataItem(Item): """Item with a data extent in the plot""" def _boundsChanged(self, checkVisibility: bool = True) -> None: """Call this method in subclass when data bounds has changed. :param bool checkVisibility: """ if not checkVisibility or self.isVisible(): if self.isVisible(): self._visibleBoundsChanged() # TODO hackish data range implementation plot = self.getPlot() if plot is not None: plot._invalidateDataRange() @docstring(Item) def setVisible(self, visible: bool): if visible != self.isVisible(): self._boundsChanged(checkVisibility=False) super().setVisible(visible) # Mix-in classes ############################################################## class ItemMixInBase(object): """Base class for Item mix-in""" def _updated(self, event=None, checkVisibility=True): """This is implemented in :class:`Item`. Mark the item as dirty (i.e., needing update). This also triggers Plot.replot. :param event: The event to send to :attr:`sigItemChanged` signal. :param bool checkVisibility: True to only mark as dirty if visible, False to always mark as dirty. """ raise RuntimeError("Issue with Mix-In class inheritance order") class LabelsMixIn(ItemMixInBase): """Mix-in class for items with x and y labels Setters are private, otherwise it needs to check the plot current active curve and access the internal current labels. """ def __init__(self): self._xlabel = None self._ylabel = None def getXLabel(self): """Return the X axis label associated to this curve :rtype: str or None """ return self._xlabel def _setXLabel(self, label): """Set the X axis label associated with this curve :param str label: The X axis label """ self._xlabel = str(label) def getYLabel(self): """Return the Y axis label associated to this curve :rtype: str or None """ return self._ylabel def _setYLabel(self, label): """Set the Y axis label associated with this curve :param str label: The Y axis label """ self._ylabel = str(label) class DraggableMixIn(ItemMixInBase): """Mix-in class for draggable items""" def __init__(self): self._draggable = False def isDraggable(self): """Returns true if image is draggable :rtype: bool """ return self._draggable def _setDraggable(self, draggable): # TODO support update """Set if image is draggable or not. This is private for not as it does not support update. :param bool draggable: """ self._draggable = bool(draggable) def drag(self, from_, to): """Perform a drag of the item. :param List[float] from_: (x, y) previous position in data coordinates :param List[float] to: (x, y) current position in data coordinates """ raise NotImplementedError("Must be implemented in subclass") class ColormapMixIn(_Colormappable, ItemMixInBase): """Mix-in class for items with colormap""" def __init__(self): self._colormap = Colormap() self._colormap.sigChanged.connect(self._colormapChanged) self.__data = None self.__cacheColormapRange = {} # Store {normalization: range} def getColormap(self): """Return the used colormap""" return self._colormap def setColormap(self, colormap): """Set the colormap of this item :param silx.gui.colors.Colormap colormap: colormap description """ if self._colormap is colormap: return if isinstance(colormap, dict): colormap = Colormap._fromDict(colormap) if self._colormap is not None: self._colormap.sigChanged.disconnect(self._colormapChanged) self._colormap = colormap if self._colormap is not None: self._colormap.sigChanged.connect(self._colormapChanged) self._colormapChanged() def _colormapChanged(self): """Handle updates of the colormap""" self._updated(ItemChangedType.COLORMAP) def _setColormappedData( self, data, copy=True, min_=None, minPositive=None, max_=None ): """Set the data used to compute the colormapped display. It also resets the cache of data ranges. This method MUST be called by inheriting classes when data is updated. :param Union[None,numpy.ndarray] data: :param Union[None,float] min_: Minimum value of the data :param Union[None,float] minPositive: Minimum of strictly positive values of the data :param Union[None,float] max_: Maximum value of the data """ self.__data = None if data is None else numpy.array(data, copy=copy or NP_OPTIONAL_COPY) self.__cacheColormapRange = {} # Reset cache # Fill-up colormap range cache if values are provided if max_ is not None and numpy.isfinite(max_): if min_ is not None and numpy.isfinite(min_): self.__cacheColormapRange[Colormap.LINEAR, Colormap.MINMAX] = min_, max_ if minPositive is not None and numpy.isfinite(minPositive): self.__cacheColormapRange[Colormap.LOGARITHM, Colormap.MINMAX] = ( minPositive, max_, ) colormap = self.getColormap() if None in (colormap.getVMin(), colormap.getVMax()): self._colormapChanged() def getColormappedData(self, copy=True): """Returns the data used to compute the displayed colors :param bool copy: True to get a copy, False to get internal data (do not modify!). :rtype: Union[None,numpy.ndarray] """ if self.__data is None: return None else: return numpy.array(self.__data, copy=copy or NP_OPTIONAL_COPY) def _getColormapAutoscaleRange(self, colormap=None): """Returns the autoscale range for current data and colormap. :param Union[None,~silx.gui.colors.Colormap] colormap: The colormap for which to compute the autoscale range. If None, the default, the colormap of the item is used :return: (vmin, vmax) range (vmin and /or vmax might be `None`) """ if colormap is None: colormap = self.getColormap() data = self.getColormappedData(copy=False) if colormap is None or data is None: return None, None normalization = colormap.getNormalization() autoscaleMode = colormap.getAutoscaleMode() key = normalization, autoscaleMode vRange = self.__cacheColormapRange.get(key, None) if vRange is None: vRange = colormap._computeAutoscaleRange(data) self.__cacheColormapRange[key] = vRange return vRange class SymbolMixIn(ItemMixInBase): """Mix-in class for items with symbol type""" _DEFAULT_SYMBOL = None """Default marker of the item""" _DEFAULT_SYMBOL_SIZE = config.DEFAULT_PLOT_SYMBOL_SIZE """Default marker size of the item""" _SUPPORTED_SYMBOLS = dict( ( ("o", "Circle"), ("d", "Diamond"), ("s", "Square"), ("+", "Plus"), ("x", "Cross"), (".", "Point"), (",", "Pixel"), ("|", "Vertical line"), ("_", "Horizontal line"), ("tickleft", "Tick left"), ("tickright", "Tick right"), ("tickup", "Tick up"), ("tickdown", "Tick down"), ("caretleft", "Caret left"), ("caretright", "Caret right"), ("caretup", "Caret up"), ("caretdown", "Caret down"), ("\u2665", "Heart"), ("", "None"), ) ) """Dict of supported symbols""" def __init__(self): if self._DEFAULT_SYMBOL is None: # Use default from config self._symbol = config.DEFAULT_PLOT_SYMBOL else: self._symbol = self._DEFAULT_SYMBOL if self._DEFAULT_SYMBOL_SIZE is None: # Use default from config self._symbol_size = config.DEFAULT_PLOT_SYMBOL_SIZE else: self._symbol_size = self._DEFAULT_SYMBOL_SIZE @classmethod def getSupportedSymbols(cls): """Returns the list of supported symbol names. :rtype: tuple of str """ return tuple(cls._SUPPORTED_SYMBOLS.keys()) @classmethod def getSupportedSymbolNames(cls): """Returns the list of supported symbol human-readable names. :rtype: tuple of str """ return tuple(cls._SUPPORTED_SYMBOLS.values()) def getSymbolName(self, symbol=None): """Returns human-readable name for a symbol. :param str symbol: The symbol from which to get the name. Default: current symbol. :rtype: str :raise KeyError: if symbol is not in :meth:`getSupportedSymbols`. """ if symbol is None: symbol = self.getSymbol() return self._SUPPORTED_SYMBOLS[symbol] def getSymbol(self): """Return the point marker type. Marker type:: - 'o' circle - '.' point - ',' pixel - '+' cross - 'x' x-cross - 'd' diamond - 's' square :rtype: str """ return self._symbol def setSymbol(self, symbol): """Set the marker type See :meth:`getSymbol`. :param str symbol: Marker type or marker name """ if symbol is None: symbol = self._DEFAULT_SYMBOL elif symbol not in self.getSupportedSymbols(): for symbolCode, name in self._SUPPORTED_SYMBOLS.items(): if name.lower() == symbol.lower(): symbol = symbolCode break else: raise ValueError("Unsupported symbol %s" % str(symbol)) if symbol != self._symbol: self._symbol = symbol self._updated(ItemChangedType.SYMBOL) def getSymbolSize(self): """Return the point marker size in points. :rtype: float """ return self._symbol_size def setSymbolSize(self, size): """Set the point marker size in points. See :meth:`getSymbolSize`. :param str symbol: Marker type """ if size is None: size = self._DEFAULT_SYMBOL_SIZE if size != self._symbol_size: self._symbol_size = size self._updated(ItemChangedType.SYMBOL_SIZE) LineStyleType = Union[ str, Tuple[Union[float, int], None], Tuple[Union[float, int], Tuple[Union[float, int], Union[float, int]]], Tuple[ Union[float, int], Tuple[ Union[float, int], Union[float, int], Union[float, int], Union[float, int] ], ], ] """Type for :class:`LineMixIn`'s line style""" class LineMixIn(ItemMixInBase): """Mix-in class for item with line""" _DEFAULT_LINEWIDTH: float = 1.0 """Default line width""" _DEFAULT_LINESTYLE: LineStyleType = "-" """Default line style""" _SUPPORTED_LINESTYLE = "", " ", "-", "--", "-.", ":", None """Supported line styles""" def __init__(self): self._linewidth: float = self._DEFAULT_LINEWIDTH self._linestyle: LineStyleType = self._DEFAULT_LINESTYLE @classmethod def getSupportedLineStyles(cls) -> tuple[str | None]: """Returns list of supported constant line styles.""" return cls._SUPPORTED_LINESTYLE def getLineWidth(self) -> float: """Return the curve line width in pixels""" return self._linewidth def setLineWidth(self, width: float): """Set the width in pixel of the curve line See :meth:`getLineWidth`. """ width = float(width) if width != self._linewidth: self._linewidth = width self._updated(ItemChangedType.LINE_WIDTH) @classmethod def isValidLineStyle(cls, style: LineStyleType | None) -> bool: """Returns True for valid styles""" if style is None or style in cls.getSupportedLineStyles(): return True if not isinstance(style, tuple): return False if ( len(style) == 2 and isinstance(style[0], (float, int)) and ( style[1] is None or style[1] == () or ( isinstance(style[1], tuple) and len(style[1]) in (2, 4) and all(map(lambda item: isinstance(item, (float, int)), style[1])) ) ) ): return True return False def getLineStyle(self) -> LineStyleType: """Return the type of the line Type of line:: - ' ' no line - '-' solid line - '--' dashed line - '-.' dash-dot line - ':' dotted line - (offset, (dash pattern)) """ return self._linestyle def setLineStyle(self, style: LineStyleType | None): """Set the style of the curve line. See :meth:`getLineStyle`. :param style: Line style """ if not self.isValidLineStyle(style): raise ValueError(f"No a valid line style: {style}") if style is None: style = self._DEFAULT_LINESTYLE if style != self._linestyle: self._linestyle = style self._updated(ItemChangedType.LINE_STYLE) class ColorMixIn(ItemMixInBase): """Mix-in class for item with color""" _DEFAULT_COLOR = (0.0, 0.0, 0.0, 1.0) """Default color of the item""" def __init__(self): self._color = self._DEFAULT_COLOR def getColor(self): """Returns the RGBA color of the item :rtype: 4-tuple of float in [0, 1] or array of colors """ return self._color def setColor(self, color, copy=True): """Set item color :param color: color(s) to be used :type color: str ("#RRGGBB") or (npoints, 4) unsigned byte array or one of the predefined color names defined in colors.py :param bool copy: True (Default) to get a copy, False to use internal representation (do not modify!) """ if isinstance(color, str): color = colors.rgba(color) elif isinstance(color, qt.QColor): color = colors.rgba(color) else: color = numpy.array(color, copy=copy or NP_OPTIONAL_COPY) # TODO more checks + improve color array support if color.ndim == 1: # Single RGBA color color = colors.rgba(color) else: # Array of colors assert color.ndim == 2 self._color = color self._updated(ItemChangedType.COLOR) class LineGapColorMixIn(ItemMixInBase): """Mix-in class for dashed line gap color""" _DEFAULT_LINE_GAP_COLOR = None """Default dashed line gap color of the item""" def __init__(self): self.__lineGapColor = self._DEFAULT_LINE_GAP_COLOR def getLineGapColor(self): """Returns the RGBA color of dashed line gap of the item :rtype: 4-tuple of float in [0, 1] or None """ return self.__lineGapColor def setLineGapColor(self, color): """Set dashed line gap color It supports: - color names: e.g., 'green' - color codes: '#RRGGBB' and '#RRGGBBAA' - indexed color names: e.g., 'C0' - RGB(A) sequence of uint8 in [0, 255] or float in [0, 1] - QColor :param color: line background color to be used :type color: Union[str, List[int], List[float], QColor, None] """ self.__lineGapColor = None if color is None else colors.rgba(color) self._updated(ItemChangedType.LINE_GAP_COLOR) class YAxisMixIn(ItemMixInBase): """Mix-in class for item with yaxis""" _DEFAULT_YAXIS = "left" """Default Y axis the item belongs to""" def __init__(self): self._yaxis = self._DEFAULT_YAXIS def getYAxis(self): """Returns the Y axis this curve belongs to. Either 'left' or 'right'. :rtype: str """ return self._yaxis def setYAxis(self, yaxis): """Set the Y axis this curve belongs to. :param str yaxis: 'left' or 'right' """ yaxis = str(yaxis) assert yaxis in ("left", "right") if yaxis != self._yaxis: self._yaxis = yaxis # Handle data extent changed for DataItem if isinstance(self, DataItem): self._boundsChanged() # Handle visible extent changed if self._isVisibleBoundsTracking(): # Switch Y axis signal connection plot = self.getPlot() if plot is not None: previousYAxis = "left" if self.getXAxis() == "right" else "right" plot.getYAxis(previousYAxis).sigLimitsChanged.disconnect( self._visibleBoundsChanged ) plot.getYAxis(self.getYAxis()).sigLimitsChanged.connect( self._visibleBoundsChanged ) self._visibleBoundsChanged() self._updated(ItemChangedType.YAXIS) class FillMixIn(ItemMixInBase): """Mix-in class for item with fill""" def __init__(self): self._fill = False def isFill(self): """Returns whether the item is filled or not. :rtype: bool """ return self._fill def setFill(self, fill): """Set whether to fill the item or not. :param bool fill: """ fill = bool(fill) if fill != self._fill: self._fill = fill self._updated(ItemChangedType.FILL) class AlphaMixIn(ItemMixInBase): """Mix-in class for item with opacity""" def __init__(self): self._alpha = 1.0 def getAlpha(self): """Returns the opacity of the item :rtype: float in [0, 1.] """ return self._alpha def setAlpha(self, alpha): """Set the opacity of the item .. note:: If the colormap already has some transparency, this alpha adds additional transparency. The alpha channel of the colormap is multiplied by this value. :param alpha: Opacity of the item, between 0 (full transparency) and 1. (full opacity) :type alpha: float """ alpha = float(alpha) alpha = max(0.0, min(alpha, 1.0)) # Clip alpha to [0., 1.] range if alpha != self._alpha: self._alpha = alpha self._updated(ItemChangedType.ALPHA) class ComplexMixIn(ItemMixInBase): """Mix-in class for complex data mode""" _SUPPORTED_COMPLEX_MODES = None """Override to only support a subset of all ComplexMode""" class ComplexMode(_Enum): """Identify available display mode for complex""" NONE = "none" ABSOLUTE = "amplitude" PHASE = "phase" REAL = "real" IMAGINARY = "imaginary" AMPLITUDE_PHASE = "amplitude_phase" LOG10_AMPLITUDE_PHASE = "log10_amplitude_phase" SQUARE_AMPLITUDE = "square_amplitude" def __init__(self): self.__complex_mode = self.ComplexMode.ABSOLUTE def getComplexMode(self): """Returns the current complex visualization mode. :rtype: ComplexMode """ return self.__complex_mode def setComplexMode(self, mode): """Set the complex visualization mode. :param ComplexMode mode: The visualization mode in: 'real', 'imaginary', 'phase', 'amplitude' :return: True if value was set, False if is was already set :rtype: bool """ mode = self.ComplexMode.from_value(mode) assert mode in self.supportedComplexModes() if mode != self.__complex_mode: self.__complex_mode = mode self._updated(ItemChangedType.COMPLEX_MODE) return True else: return False def _convertComplexData(self, data, mode=None): """Convert complex data to the specific mode. :param Union[ComplexMode,None] mode: The kind of value to compute. If None (the default), the current complex mode is used. :return: The converted dataset :rtype: Union[numpy.ndarray[float],None] """ if data is None: return None if mode is None: mode = self.getComplexMode() if mode is self.ComplexMode.REAL: return numpy.real(data) elif mode is self.ComplexMode.IMAGINARY: return numpy.imag(data) elif mode is self.ComplexMode.ABSOLUTE: return numpy.absolute(data) elif mode is self.ComplexMode.PHASE: return numpy.angle(data) elif mode is self.ComplexMode.SQUARE_AMPLITUDE: return numpy.absolute(data) ** 2 else: raise ValueError("Unsupported conversion mode: %s", str(mode)) @classmethod def supportedComplexModes(cls): """Returns the list of supported complex visualization modes. See :class:`ComplexMode` and :meth:`setComplexMode`. :rtype: List[ComplexMode] """ if cls._SUPPORTED_COMPLEX_MODES is None: return cls.ComplexMode.members() else: return cls._SUPPORTED_COMPLEX_MODES class ScatterVisualizationMixIn(ItemMixInBase): """Mix-in class for scatter plot visualization modes""" _SUPPORTED_SCATTER_VISUALIZATION = None """Allows to override supported Visualizations""" @enum.unique class Visualization(_Enum): """Different modes of scatter plot visualizations""" POINTS = "points" """Display scatter plot as a point cloud""" LINES = "lines" """Display scatter plot as a wireframe. This is based on Delaunay triangulation """ SOLID = "solid" """Display scatter plot as a set of filled triangles. This is based on Delaunay triangulation """ REGULAR_GRID = "regular_grid" """Display scatter plot as an image. It expects the points to be the intersection of a regular grid, and the order of points following that of an image. First line, then second one, and always in the same direction (either all lines from left to right or all from right to left). """ IRREGULAR_GRID = "irregular_grid" """Display scatter plot as contiguous quadrilaterals. It expects the points to be the intersection of an irregular grid, and the order of points following that of an image. First line, then second one, and always in the same direction (either all lines from left to right or all from right to left). """ BINNED_STATISTIC = "binned_statistic" """Display scatter plot as 2D binned statistic (i.e., generalized histogram). """ @enum.unique class VisualizationParameter(_Enum): """Different parameter names for scatter plot visualizations""" GRID_MAJOR_ORDER = "grid_major_order" """The major order of points in the regular grid. Either 'row' (row-major, fast X) or 'column' (column-major, fast Y). """ GRID_BOUNDS = "grid_bounds" """The expected range in data coordinates of the regular grid. A 2-tuple of 2-tuple: (begin (x, y), end (x, y)). This provides the data coordinates of the first point and the expected last on. As for `GRID_SHAPE`, this can be wider than the current data. """ GRID_SHAPE = "grid_shape" """The expected size of the regular grid (height, width). The given shape can be wider than the number of points, in which case the grid is not fully filled. """ BINNED_STATISTIC_SHAPE = "binned_statistic_shape" """The number of bins in each dimension (height, width). """ BINNED_STATISTIC_FUNCTION = "binned_statistic_function" """The reduction function to apply to each bin (str). Available reduction functions are: 'mean' (default), 'count', 'sum'. """ DATA_BOUNDS_HINT = "data_bounds_hint" """The expected bounds of the data in data coordinates. A 2-tuple of 2-tuple: ((ymin, ymax), (xmin, xmax)). This provides a hint for the data ranges in both dimensions. It is eventually enlarged with actually data ranges. WARNING: dimension 0 i.e., Y first. """ _SUPPORTED_VISUALIZATION_PARAMETER_VALUES = { VisualizationParameter.GRID_MAJOR_ORDER: ("row", "column"), VisualizationParameter.BINNED_STATISTIC_FUNCTION: ("mean", "count", "sum"), } """Supported visualization parameter values. Defined for parameters with a set of acceptable values. """ def __init__(self): self.__visualization = self.Visualization.POINTS self.__parameters = dict( # Init parameters to None (parameter, None) for parameter in self.VisualizationParameter ) self.__parameters[ self.VisualizationParameter.BINNED_STATISTIC_FUNCTION ] = "mean" @classmethod def supportedVisualizations(cls): """Returns the list of supported scatter visualization modes. See :meth:`setVisualization` :rtype: List[Visualization] """ if cls._SUPPORTED_SCATTER_VISUALIZATION is None: return cls.Visualization.members() else: return cls._SUPPORTED_SCATTER_VISUALIZATION @classmethod def supportedVisualizationParameterValues(cls, parameter): """Returns the list of supported scatter visualization modes. See :meth:`VisualizationParameters` :param VisualizationParameter parameter: This parameter for which to retrieve the supported values. :returns: tuple of supported of values or None if not defined. """ parameter = cls.VisualizationParameter(parameter) return cls._SUPPORTED_VISUALIZATION_PARAMETER_VALUES.get(parameter, None) def setVisualization(self, mode): """Set the scatter plot visualization mode to use. See :class:`Visualization` for all possible values, and :meth:`supportedVisualizations` for supported ones. :param Union[str,Visualization] mode: The visualization mode to use. :return: True if value was set, False if is was already set :rtype: bool """ mode = self.Visualization.from_value(mode) assert mode in self.supportedVisualizations() if mode != self.__visualization: self.__visualization = mode self._updated(ItemChangedType.VISUALIZATION_MODE) return True else: return False def getVisualization(self): """Returns the scatter plot visualization mode in use. :rtype: Visualization """ return self.__visualization def setVisualizationParameter(self, parameter, value=None): """Set the given visualization parameter. :param Union[str,VisualizationParameter] parameter: The name of the parameter to set :param value: The value to use for this parameter Set to None to automatically set the parameter :raises ValueError: If parameter is not supported :return: True if parameter was set, False if is was already set :rtype: bool :raise ValueError: If value is not supported """ parameter = self.VisualizationParameter.from_value(parameter) if self.__parameters[parameter] != value: validValues = self.supportedVisualizationParameterValues(parameter) if validValues is not None and value not in validValues: raise ValueError("Unsupported parameter value: %s" % str(value)) self.__parameters[parameter] = value self._updated(ItemChangedType.VISUALIZATION_MODE) return True return False def getVisualizationParameter(self, parameter): """Returns the value of the given visualization parameter. This method returns the parameter as set by :meth:`setVisualizationParameter`. :param parameter: The name of the parameter to retrieve :returns: The value previously set or None if automatically set :raises ValueError: If parameter is not supported """ if parameter not in self.VisualizationParameter: raise ValueError("parameter not supported: %s", parameter) return self.__parameters[parameter] def getCurrentVisualizationParameter(self, parameter): """Returns the current value of the given visualization parameter. If the parameter was set by :meth:`setVisualizationParameter` to a value that is not None, this value is returned; else the current value that is automatically computed is returned. :param parameter: The name of the parameter to retrieve :returns: The current value (either set or automatically computed) :raises ValueError: If parameter is not supported """ # Override in subclass to provide automatically computed parameters return self.getVisualizationParameter(parameter) class PointsBase(DataItem, SymbolMixIn, AlphaMixIn): """Base class for :class:`Curve` and :class:`Scatter`""" # note: _filterData must be overloaded if you overload # getData to change its signature _DEFAULT_Z_LAYER = 1 """Default overlay layer for points, on top of images.""" def __init__(self): DataItem.__init__(self) SymbolMixIn.__init__(self) AlphaMixIn.__init__(self) self._x = () self._y = () self._xerror = None self._yerror = None # Store filtered data for x > 0 and/or y > 0 self._filteredCache = {} self._clippedCache = {} # Store bounds depending on axes filtering >0: # key is (isXPositiveFilter, isYPositiveFilter) self._boundsCache = {} @staticmethod def _errorAs2DArray( error: numpy.ndarray | numbers.Number, length: int, ) -> numpy.ndarray: """Convert error to a 2D array :param error: The error argument to convert to an array :param length: Expected size of error array :returns: 2D array of errors """ # Convert scalar to array if not isinstance(error, numpy.ndarray): error = numpy.full((length,), error, dtype=numpy.float64) # Convert Nx1 to N array if error.ndim == 2 and error.shape[1] == 1 and length != 1: error = numpy.ravel(error) # Return 2D array return numpy.atleast_2d(error) @classmethod def _logFilterError( cls, value: numpy.ndarray, error: numpy.ndarray | float | int | None, ) -> numpy.ndarray | None: """Filter/convert error values if they go <= 0. Replace error leading to negative values by nan :param value: 1D array of values :param error: Array of errors: scalar, N, Nx1 or 2xN or None. :return: Filtered error so error bars are never negative """ if error is None: return None errorArray = cls._errorAs2DArray(error, len(value)) # Supports error being scalar, N or 2xN array valueMinusError = value - errorArray[0] errorClipped = numpy.isnan(valueMinusError) mask = numpy.logical_not(errorClipped) errorClipped[mask] = valueMinusError[mask] <= 0 if not numpy.any(errorClipped): # No filtering return error # expand errorbars to 2xN if len(errorArray) == 1: filteredError = numpy.empty((2, len(value)), dtype=numpy.float64) filteredError[0, :] = errorArray[0] filteredError[1, :] = errorArray[0] else: # 2xN array filteredError = numpy.array(errorArray, copy=True, dtype=numpy.float64) filteredError[0, errorClipped] = numpy.nan return filteredError def _getClippingBoolArray(self, xPositive, yPositive): """Compute a boolean array to filter out points with negative coordinates on log axes. :param bool xPositive: True to filter arrays according to X coords. :param bool yPositive: True to filter arrays according to Y coords. :rtype: boolean numpy.ndarray """ assert xPositive or yPositive if (xPositive, yPositive) not in self._clippedCache: xclipped, yclipped = False, False if xPositive: x = self.getXData(copy=False) with numpy.errstate(invalid="ignore"): # Ignore NaN warnings xclipped = x <= 0 if yPositive: y = self.getYData(copy=False) with numpy.errstate(invalid="ignore"): # Ignore NaN warnings yclipped = y <= 0 self._clippedCache[(xPositive, yPositive)] = numpy.logical_or( xclipped, yclipped ) return self._clippedCache[(xPositive, yPositive)] @staticmethod def _filterNegativeValues( data: numpy.ndarray | numbers.Number | None, ) -> numpy.ndarray | numbers.Number | None: """Returns data with negative values to 0""" if data is None: return None # Convert data to array to avoid specific case for complex scalar if numpy.all(numpy.asarray(data) >= 0): return data return numpy.clip(data, 0, None) # Also works for scalars def _filterData(self, xPositive, yPositive): """Filter out errors<0 and values with x or y <= 0 on log axes :param bool xPositive: True to filter arrays according to X coords. :param bool yPositive: True to filter arrays according to Y coords. :return: The filter arrays or unchanged object if filtering not needed :rtype: (x, y, xerror, yerror) """ x = self.getXData(copy=False) y = self.getYData(copy=False) xerror = self._filterNegativeValues(self.getXErrorData(copy=False)) yerror = self._filterNegativeValues(self.getYErrorData(copy=False)) if xPositive or yPositive: clipped = self._getClippingBoolArray(xPositive, yPositive) if numpy.any(clipped): # copy to keep original array and convert to float x = numpy.array(x, copy=True, dtype=numpy.float64) x[clipped] = numpy.nan y = numpy.array(y, copy=True, dtype=numpy.float64) y[clipped] = numpy.nan if xPositive and xerror is not None: xerror = self._logFilterError(x, xerror) if yPositive and yerror is not None: yerror = self._logFilterError(y, yerror) return x, y, xerror, yerror @classmethod def __minMaxDataWithError( cls, data: numpy.ndarray, error: Optional[Union[float, numpy.ndarray]], positiveOnly: bool, ) -> Tuple[float]: if error is None: min_, max_ = min_max(data, finite=True) return min_, max_ errorArray = cls._errorAs2DArray(error, len(data)) isNanError = numpy.isnan(errorArray) dataMinusError = data - errorArray[0] dataMinusError[isNanError[0]] = data[isNanError[0]] dataMinusError = dataMinusError[numpy.isfinite(dataMinusError)] if positiveOnly: dataMinusError = dataMinusError[dataMinusError > 0] min_ = numpy.nan if dataMinusError.size == 0 else numpy.min(dataMinusError) dataPlusError = data + errorArray[-1] dataPlusError[isNanError[-1]] = data[isNanError[-1]] dataPlusError = dataPlusError[numpy.isfinite(dataPlusError)] if positiveOnly: dataPlusError = dataPlusError[dataPlusError > 0] max_ = numpy.nan if dataPlusError.size == 0 else numpy.max(dataPlusError) return min_, max_ def _getBounds(self): if self.getXData(copy=False).size == 0: # Empty data return None plot = self.getPlot() if plot is not None: xPositive = plot.getXAxis()._isLogarithmic() yPositive = plot.getYAxis()._isLogarithmic() else: xPositive = False yPositive = False if (xPositive, yPositive) not in self._boundsCache: # use the getData class method because instance method can be # overloaded to return additional arrays data = PointsBase.getData(self, copy=False, displayed=True) if len(data) == 5: # hack to avoid duplicating caching mechanism in Scatter # (happens when cached data is used, caching done using # Scatter._filterData) x, y, xerror, yerror = data[0], data[1], data[3], data[4] else: x, y, xerror, yerror = data xmin, xmax = self.__minMaxDataWithError(x, xerror, xPositive) ymin, ymax = self.__minMaxDataWithError(y, yerror, yPositive) self._boundsCache[(xPositive, yPositive)] = tuple( [ (bound if bound is not None else numpy.nan) for bound in (xmin, xmax, ymin, ymax) ] ) return self._boundsCache[(xPositive, yPositive)] def _getCachedData(self): """Return cached filtered data if applicable. Return None if caching is not applicable.""" plot = self.getPlot() if plot is None: return None xPositive = plot.getXAxis()._isLogarithmic() yPositive = plot.getYAxis()._isLogarithmic() if (xPositive, yPositive) not in self._filteredCache: self._filteredCache[(xPositive, yPositive)] = self._filterData( xPositive, yPositive ) return self._filteredCache[(xPositive, yPositive)] def getData(self, copy=True, displayed=False): """Returns the x, y values of the curve points and xerror, yerror :param bool copy: True (Default) to get a copy, False to use internal representation (do not modify!) :param bool displayed: True to only get curve points that are displayed in the plot. Note: If plot has log scale, negative points are not displayed. Negative errors are set to 0. :returns: (x, y, xerror, yerror) :rtype: 4-tuple of numpy.ndarray """ if displayed: # filter data according to plot state cached_data = self._getCachedData() if cached_data is not None: return cached_data return ( self.getXData(copy), self.getYData(copy), self.getXErrorData(copy), self.getYErrorData(copy), ) def getXData(self, copy=True): """Returns the x coordinates of the data points :param copy: True (Default) to get a copy, False to use internal representation (do not modify!) :rtype: numpy.ndarray """ return numpy.array(self._x, copy=copy or NP_OPTIONAL_COPY) def getYData(self, copy=True): """Returns the y coordinates of the data points :param copy: True (Default) to get a copy, False to use internal representation (do not modify!) :rtype: numpy.ndarray """ return numpy.array(self._y, copy=copy or NP_OPTIONAL_COPY) def getXErrorData(self, copy=True): """Returns the x error of the points :param copy: True (Default) to get a copy, False to use internal representation (do not modify!) :rtype: numpy.ndarray, float or None """ if isinstance(self._xerror, numpy.ndarray): return numpy.array(self._xerror, copy=copy or NP_OPTIONAL_COPY) else: return self._xerror # float or None def getYErrorData(self, copy=True): """Returns the y error of the points :param copy: True (Default) to get a copy, False to use internal representation (do not modify!) :rtype: numpy.ndarray, float or None """ if isinstance(self._yerror, numpy.ndarray): return numpy.array(self._yerror, copy=copy or NP_OPTIONAL_COPY) else: return self._yerror # float or None def setData(self, x, y, xerror=None, yerror=None, copy=True): """Set the data of the curve. :param numpy.ndarray x: The data corresponding to the x coordinates. :param numpy.ndarray y: The data corresponding to the y coordinates. :param xerror: Values with the uncertainties on the x values :type xerror: A float, or a numpy.ndarray of float32. If it is an array, it can either be a 1D array of same length as the data or a 2D array with 2 rows of same length as the data: row 0 for lower errors, row 1 for upper errors. :param yerror: Values with the uncertainties on the y values. :type yerror: A float, or a numpy.ndarray of float32. See xerror. :param bool copy: True make a copy of the data (default), False to use provided arrays. """ x = numpy.array(x, copy=copy or NP_OPTIONAL_COPY) y = numpy.array(y, copy=copy or NP_OPTIONAL_COPY) assert len(x) == len(y) assert x.ndim == y.ndim == 1 # Convert complex data if numpy.iscomplexobj(x): _logger.warning("Converting x data to absolute value to plot it.") x = numpy.absolute(x) if numpy.iscomplexobj(y): _logger.warning("Converting y data to absolute value to plot it.") y = numpy.absolute(y) if xerror is not None: if isinstance(xerror, abc.Iterable): xerror = numpy.array(xerror, copy=copy or NP_OPTIONAL_COPY) if numpy.iscomplexobj(xerror): _logger.warning( "Converting xerror data to absolute value to plot it." ) xerror = numpy.absolute(xerror) else: xerror = float(xerror) if yerror is not None: if isinstance(yerror, abc.Iterable): yerror = numpy.array(yerror, copy=copy or NP_OPTIONAL_COPY) if numpy.iscomplexobj(yerror): _logger.warning( "Converting yerror data to absolute value to plot it." ) yerror = numpy.absolute(yerror) else: yerror = float(yerror) # TODO checks on xerror, yerror self._x, self._y = x, y self._xerror, self._yerror = xerror, yerror self._boundsCache = {} # Reset cached bounds self._filteredCache = {} # Reset cached filtered data self._clippedCache = {} # Reset cached clipped bool array self._boundsChanged() self._updated(ItemChangedType.DATA) class BaselineMixIn(object): """Base class for Baseline mix-in""" def __init__(self, baseline=None): self._baseline = baseline def _setBaseline(self, baseline): """ Set baseline value :param baseline: baseline value(s) :type: Union[None,float,numpy.ndarray] """ if isinstance(baseline, abc.Iterable): baseline = numpy.array(baseline) self._baseline = baseline def getBaseline(self, copy=True): """ :param bool copy: :return: histogram baseline :rtype: Union[None,float,numpy.ndarray] """ if isinstance(self._baseline, numpy.ndarray): return numpy.array(self._baseline, copy=True) else: return self._baseline class _Style: """Object which store styles""" class HighlightedMixIn(ItemMixInBase): def __init__(self): self._highlightStyle = self._DEFAULT_HIGHLIGHT_STYLE self._highlighted = False def isHighlighted(self): """Returns True if curve is highlighted. :rtype: bool """ return self._highlighted def setHighlighted(self, highlighted): """Set the highlight state of the curve :param bool highlighted: """ highlighted = bool(highlighted) if highlighted != self._highlighted: self._highlighted = highlighted # TODO inefficient: better to use backend's setCurveColor self._updated(ItemChangedType.HIGHLIGHTED) def getHighlightedStyle(self): """Returns the highlighted style in use :rtype: CurveStyle """ return self._highlightStyle def setHighlightedStyle(self, style): """Set the style to use for highlighting :param CurveStyle style: New style to use """ previous = self.getHighlightedStyle() if style != previous: assert isinstance(style, _Style) self._highlightStyle = style self._updated(ItemChangedType.HIGHLIGHTED_STYLE) # Backward compatibility event if previous.getColor() != style.getColor(): self._updated(ItemChangedType.HIGHLIGHTED_COLOR)