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"""A :class:`.PlotWidget` with additional toolbars.
The :class:`PlotWindow` is a subclass of :class:`.PlotWidget`.
"""
__authors__ = ["V.A. Sole", "T. Vincent"]
__license__ = "MIT"
__date__ = "12/04/2019"
from collections import abc
import logging
import weakref
import silx
from silx.utils.weakref import WeakMethodProxy
from silx.utils.proxy import docstring
from . import PlotWidget
from . import actions
from . import items
from .actions import medfilt as actions_medfilt
from .actions import fit as actions_fit
from .actions import control as actions_control
from .actions import histogram as actions_histogram
from . import PlotToolButtons
from . import tools
from .Profile import ProfileToolBar
from .LegendSelector import LegendsDockWidget
from .CurvesROIWidget import CurvesROIDockWidget
from .MaskToolsWidget import MaskToolsDockWidget
from .StatsWidget import BasicStatsWidget
from .ColorBar import ColorBarWidget
try:
from ..console import IPythonDockWidget
except ImportError:
IPythonDockWidget = None
from .. import qt
_logger = logging.getLogger(__name__)
[docs]
class PlotWindow(PlotWidget):
"""Qt Widget providing a 1D/2D plot area and additional tools.
This widgets inherits from :class:`.PlotWidget` and provides its plot API.
Initialiser parameters:
:param parent: The parent of this widget or None.
:param backend: The backend to use for the plot (default: matplotlib).
See :class:`.PlotWidget` for the list of supported backend.
:type backend: str or :class:`BackendBase.BackendBase`
:param bool resetzoom: Toggle visibility of reset zoom action.
:param bool autoScale: Toggle visibility of axes autoscale actions.
:param bool logScale: Toggle visibility of axes log scale actions.
:param bool grid: Toggle visibility of grid mode action.
:param bool curveStyle: Toggle visibility of curve style action.
:param bool colormap: Toggle visibility of colormap action.
:param bool aspectRatio: Toggle visibility of aspect ratio button.
:param bool yInverted: Toggle visibility of Y axis direction button.
:param bool copy: Toggle visibility of copy action.
:param bool save: Toggle visibility of save action.
:param bool print_: Toggle visibility of print action.
:param bool control: True to display an Options button with a sub-menu
to show legends, toggle crosshair and pan with arrows.
(Default: False)
:param position: True to display widget with (x, y) mouse position
(Default: False).
It also supports a list of (name, funct(x, y)->value)
to customize the displayed values.
See :class:`~silx.gui.plot.tools.PositionInfo`.
:param bool roi: Toggle visibilty of ROI action.
:param bool mask: Toggle visibilty of mask action.
:param bool fit: Toggle visibilty of fit action.
"""
def __init__(
self,
parent=None,
backend=None,
resetzoom=True,
autoScale=True,
logScale=True,
grid=True,
curveStyle=True,
colormap=True,
aspectRatio=True,
yInverted=True,
copy=True,
save=True,
print_=True,
control=False,
position=False,
roi=True,
mask=True,
fit=False,
):
super(PlotWindow, self).__init__(parent=parent, backend=backend)
if parent is None:
self.setWindowTitle("PlotWindow")
self._dockWidgets = []
# lazy loaded dock widgets
self._legendsDockWidget = None
self._curvesROIDockWidget = None
self._maskToolsDockWidget = None
self._consoleDockWidget = None
self._statsDockWidget = None
# Create color bar, hidden by default for backward compatibility
self._colorbar = ColorBarWidget(parent=self, plot=self)
# Init actions
self.group = qt.QActionGroup(self)
self.group.setExclusive(False)
self.resetZoomAction = self.group.addAction(
actions.control.ResetZoomAction(self, parent=self)
)
self.resetZoomAction.setVisible(resetzoom)
self.addAction(self.resetZoomAction)
self.zoomInAction = self.group.addAction(
actions.control.ZoomInAction(self, parent=self)
)
self.zoomInAction.setVisible(False)
self.addAction(self.zoomInAction)
self.zoomOutAction = self.group.addAction(
actions.control.ZoomOutAction(self, parent=self)
)
self.zoomOutAction.setVisible(False)
self.addAction(self.zoomOutAction)
self.xAxisAutoScaleAction = self.group.addAction(
actions.control.XAxisAutoScaleAction(self, parent=self)
)
self.xAxisAutoScaleAction.setVisible(autoScale)
self.addAction(self.xAxisAutoScaleAction)
self.yAxisAutoScaleAction = self.group.addAction(
actions.control.YAxisAutoScaleAction(self, parent=self)
)
self.yAxisAutoScaleAction.setVisible(autoScale)
self.addAction(self.yAxisAutoScaleAction)
self.xAxisLogarithmicAction = self.group.addAction(
actions.control.XAxisLogarithmicAction(self, parent=self)
)
self.xAxisLogarithmicAction.setVisible(logScale)
self.addAction(self.xAxisLogarithmicAction)
self.yAxisLogarithmicAction = self.group.addAction(
actions.control.YAxisLogarithmicAction(self, parent=self)
)
self.yAxisLogarithmicAction.setVisible(logScale)
self.addAction(self.yAxisLogarithmicAction)
self.gridAction = self.group.addAction(
actions.control.GridAction(self, gridMode="both", parent=self)
)
self.gridAction.setVisible(grid)
self.addAction(self.gridAction)
self.curveStyleAction = self.group.addAction(
actions.control.CurveStyleAction(self, parent=self)
)
self.curveStyleAction.setVisible(curveStyle)
self.addAction(self.curveStyleAction)
self.colormapAction = self.group.addAction(
actions.control.ColormapAction(self, parent=self)
)
self.colormapAction.setVisible(colormap)
self.addAction(self.colormapAction)
self.colorbarAction = self.group.addAction(
actions_control.ColorBarAction(self, parent=self)
)
self.colorbarAction.setVisible(False)
self.addAction(self.colorbarAction)
self._colorbar.setVisible(False)
self.keepDataAspectRatioButton = PlotToolButtons.AspectToolButton(
parent=self, plot=self
)
self.keepDataAspectRatioButton.setVisible(aspectRatio)
self.yAxisInvertedButton = PlotToolButtons.YAxisOriginToolButton(
parent=self, plot=self
)
self.yAxisInvertedButton.setVisible(yInverted)
self.group.addAction(self.getRoiAction())
self.getRoiAction().setVisible(roi)
self.group.addAction(self.getMaskAction())
self.getMaskAction().setVisible(mask)
self._intensityHistoAction = self.group.addAction(
actions_histogram.PixelIntensitiesHistoAction(self, parent=self)
)
self._intensityHistoAction.setVisible(False)
self._medianFilter2DAction = self.group.addAction(
actions_medfilt.MedianFilter2DAction(self, parent=self)
)
self._medianFilter2DAction.setVisible(False)
self._medianFilter1DAction = self.group.addAction(
actions_medfilt.MedianFilter1DAction(self, parent=self)
)
self._medianFilter1DAction.setVisible(False)
self.fitAction = self.group.addAction(actions_fit.FitAction(self, parent=self))
self.fitAction.setVisible(fit)
self.addAction(self.fitAction)
# lazy loaded actions needed by the controlButton menu
self._consoleAction = None
self._panWithArrowKeysAction = None
self._crosshairAction = None
# Make colorbar background white
self._colorbar.setAutoFillBackground(True)
self._sigAxesVisibilityChanged.connect(self._updateColorBarBackground)
self._updateColorBarBackground()
if control: # Create control button only if requested
self.controlButton = qt.QToolButton()
self.controlButton.setText("Options")
self.controlButton.setToolButtonStyle(qt.Qt.ToolButtonTextBesideIcon)
self.controlButton.setAutoRaise(True)
self.controlButton.setPopupMode(qt.QToolButton.InstantPopup)
menu = qt.QMenu(self)
menu.aboutToShow.connect(self._customControlButtonMenu)
self.controlButton.setMenu(menu)
self._positionWidget = None
if position: # Add PositionInfo widget to the bottom of the plot
if isinstance(position, abc.Iterable):
# Use position as a set of converters
converters = position
else:
converters = None
self._positionWidget = tools.PositionInfo(plot=self, converters=converters)
# Set a snapping mode that is consistent with legacy one
self._positionWidget.setSnappingMode(
tools.PositionInfo.SNAPPING_CROSSHAIR
| tools.PositionInfo.SNAPPING_ACTIVE_ONLY
| tools.PositionInfo.SNAPPING_SYMBOLS_ONLY
| tools.PositionInfo.SNAPPING_CURVE
| tools.PositionInfo.SNAPPING_SCATTER
)
self.__setCentralWidget()
# Creating the toolbar also create actions for toolbuttons
self._interactiveModeToolBar = tools.InteractiveModeToolBar(
parent=self, plot=self
)
self.addToolBar(self._interactiveModeToolBar)
self._toolbar = self._createToolBar(title="Plot", parent=self)
self.addToolBar(self._toolbar)
self._outputToolBar = tools.OutputToolBar(parent=self, plot=self)
self._outputToolBar.getCopyAction().setVisible(copy)
self._outputToolBar.getSaveAction().setVisible(save)
self._outputToolBar.getPrintAction().setVisible(print_)
self.addToolBar(self._outputToolBar)
# Activate shortcuts in PlotWindow widget:
for toolbar in (self._interactiveModeToolBar, self._outputToolBar):
for action in toolbar.actions():
self.addAction(action)
def __setCentralWidget(self):
"""Set central widget to host plot backend, colorbar, and bottom bar"""
gridLayout = qt.QGridLayout()
gridLayout.setSpacing(0)
gridLayout.setContentsMargins(0, 0, 0, 0)
gridLayout.addWidget(self.getWidgetHandle(), 0, 0)
gridLayout.addWidget(self._colorbar, 0, 1)
gridLayout.setRowStretch(0, 1)
gridLayout.setColumnStretch(0, 1)
centralWidget = qt.QWidget(self)
centralWidget.setLayout(gridLayout)
if hasattr(self, "controlButton") or self._positionWidget is not None:
hbox = qt.QHBoxLayout()
hbox.setContentsMargins(0, 0, 0, 0)
if hasattr(self, "controlButton"):
hbox.addWidget(self.controlButton)
if self._positionWidget is not None:
hbox.addWidget(self._positionWidget)
hbox.addStretch(1)
bottomBar = qt.QWidget(centralWidget)
bottomBar.setLayout(hbox)
gridLayout.addWidget(bottomBar, 1, 0, 1, -1)
self.setCentralWidget(centralWidget)
[docs]
@docstring(PlotWidget)
def setBackend(self, backend):
super(PlotWindow, self).setBackend(backend)
self.__setCentralWidget() # Recreate PlotWindow's central widget
[docs]
@docstring(PlotWidget)
def setBackgroundColor(self, color):
super(PlotWindow, self).setBackgroundColor(color)
self._updateColorBarBackground()
[docs]
@docstring(PlotWidget)
def setDataBackgroundColor(self, color):
super(PlotWindow, self).setDataBackgroundColor(color)
self._updateColorBarBackground()
[docs]
@docstring(PlotWidget)
def setForegroundColor(self, color):
super(PlotWindow, self).setForegroundColor(color)
self._updateColorBarBackground()
def _updateColorBarBackground(self):
"""Update the colorbar background according to the state of the plot"""
if self.isAxesDisplayed():
color = self.getBackgroundColor()
else:
color = self.getDataBackgroundColor()
if not color.isValid():
# If no color defined, use the background one
color = self.getBackgroundColor()
foreground = self.getForegroundColor()
palette = self._colorbar.palette()
palette.setColor(qt.QPalette.Window, color)
palette.setColor(qt.QPalette.WindowText, foreground)
palette.setColor(qt.QPalette.Text, foreground)
self._colorbar.setPalette(palette)
[docs]
def getSelectionMask(self):
"""Return the current mask handled by :attr:`maskToolsDockWidget`.
:return: The array of the mask with dimension of the 'active' image.
If there is no active image, an empty array is returned.
:rtype: 2D numpy.ndarray of uint8
"""
return self.getMaskToolsDockWidget().getSelectionMask()
[docs]
def setSelectionMask(self, mask):
"""Set the mask handled by :attr:`maskToolsDockWidget`.
If the provided mask has not the same dimension as the 'active'
image, it will by cropped or padded.
:param mask: The array to use for the mask.
:type mask: numpy.ndarray of uint8 of dimension 2, C-contiguous.
Array of other types are converted.
:return: True if success, False if failed
"""
return bool(self.getMaskToolsDockWidget().setSelectionMask(mask))
def _toggleConsoleVisibility(self, isChecked=False):
"""Create IPythonDockWidget if needed,
show it or hide it."""
# create widget if needed (first call)
if self._consoleDockWidget is None:
available_vars = {"plt": weakref.proxy(self)}
banner = "The variable 'plt' is available. Use the 'whos' "
banner += "and 'help(plt)' commands for more information.\n\n"
self._consoleDockWidget = IPythonDockWidget(
available_vars=available_vars, custom_banner=banner, parent=self
)
self.addTabbedDockWidget(self._consoleDockWidget)
self._consoleDockWidget.toggleViewAction().toggled.connect(
self._consoleDockWidgetToggled
)
self._consoleDockWidget.setVisible(isChecked)
def _consoleVisibilityTriggered(self, isChecked):
if isChecked and self.isVisible():
self._consoleDockWidget.show()
self._consoleDockWidget.raise_()
def _consoleDockWidgetToggled(self, isChecked):
if self.isVisible():
self.getConsoleAction().setChecked(isChecked)
def _createToolBar(self, title, parent):
"""Create a QToolBar from the QAction of the PlotWindow.
:param str title: The title of the QMenu
:param qt.QWidget parent: See :class:`QToolBar`
"""
toolbar = qt.QToolBar(title, parent)
# Order widgets with actions
objects = self.group.actions()
# Add push buttons to list
index = objects.index(self.colormapAction)
objects.insert(index + 1, self.keepDataAspectRatioButton)
objects.insert(index + 2, self.yAxisInvertedButton)
for obj in objects:
if isinstance(obj, qt.QAction):
toolbar.addAction(obj)
else:
# Add action for toolbutton in order to allow changing
# visibility (see doc QToolBar.addWidget doc)
if obj is self.keepDataAspectRatioButton:
self.keepDataAspectRatioAction = toolbar.addWidget(obj)
elif obj is self.yAxisInvertedButton:
self.yAxisInvertedAction = toolbar.addWidget(obj)
else:
raise RuntimeError("unknow action to be defined")
return toolbar
def _customControlButtonMenu(self):
"""Display Options button sub-menu."""
controlMenu = self.controlButton.menu()
controlMenu.clear()
controlMenu.addAction(self.getLegendsDockWidget().toggleViewAction())
controlMenu.addAction(self.getRoiAction())
controlMenu.addAction(self.getStatsAction())
controlMenu.addAction(self.getMaskAction())
controlMenu.addAction(self.getConsoleAction())
controlMenu.addSeparator()
controlMenu.addAction(self.getCrosshairAction())
controlMenu.addAction(self.getPanWithArrowKeysAction())
def _handleFirstDockWidgetShow(self, visible):
"""Handle QDockWidget.visibilityChanged
It calls :meth:`addTabbedDockWidget` for the `sender` widget.
This allows to call `addTabbedDockWidget` lazily.
It disconnect itself from the signal once done.
:param bool visible:
"""
if visible:
dockWidget = self.sender()
dockWidget.visibilityChanged.disconnect(self._handleFirstDockWidgetShow)
self.addTabbedDockWidget(dockWidget)
def _handleDockWidgetViewActionTriggered(self, checked):
if checked:
action = self.sender()
if action is None:
return
dockWidget = action.parent()
if dockWidget is None:
return
dockWidget.show() # Show needed here for raise to have an effect
dockWidget.raise_()
# getters for dock widgets
def getCurvesRoiDockWidget(self):
# Undocumented for a "soft deprecation" in version 0.7.0
# (still used internally for lazy loading)
if self._curvesROIDockWidget is None:
self._curvesROIDockWidget = CurvesROIDockWidget(
plot=self, name="Regions Of Interest"
)
self._curvesROIDockWidget.hide()
self._curvesROIDockWidget.toggleViewAction().triggered.connect(
self._handleDockWidgetViewActionTriggered
)
self._curvesROIDockWidget.visibilityChanged.connect(
self._handleFirstDockWidgetShow
)
return self._curvesROIDockWidget
# getters for actions
[docs]
def getConsoleAction(self):
"""QAction handling the IPython console activation.
By default, it is connected to a method that initializes the
console widget the first time the user clicks the "Console" menu
button. The following clicks, after initialization is done,
will toggle the visibility of the console widget.
:rtype: QAction
"""
if self._consoleAction is None:
self._consoleAction = qt.QAction("Console", self)
self._consoleAction.setCheckable(True)
if IPythonDockWidget is not None:
self._consoleAction.toggled.connect(self._toggleConsoleVisibility)
self._consoleAction.triggered.connect(self._consoleVisibilityTriggered)
else:
self._consoleAction.setEnabled(False)
return self._consoleAction
[docs]
def getCrosshairAction(self):
"""Action toggling crosshair cursor mode.
:rtype: actions.PlotAction
"""
if self._crosshairAction is None:
self._crosshairAction = actions.control.CrosshairAction(self, color="red")
return self._crosshairAction
[docs]
def getMaskAction(self):
"""QAction toggling image mask dock widget
:rtype: QAction
"""
return self.getMaskToolsDockWidget().toggleViewAction()
[docs]
def getPanWithArrowKeysAction(self):
"""Action toggling pan with arrow keys.
:rtype: actions.PlotAction
"""
if self._panWithArrowKeysAction is None:
self._panWithArrowKeysAction = actions.control.PanWithArrowKeysAction(self)
return self._panWithArrowKeysAction
def getStatsAction(self):
return self.getStatsWidget().parent().toggleViewAction()
[docs]
def getRoiAction(self):
"""QAction toggling curve ROI dock widget
:rtype: QAction
"""
return self.getCurvesRoiDockWidget().toggleViewAction()
[docs]
def getResetZoomAction(self):
"""Action resetting the zoom
:rtype: actions.PlotAction
"""
return self.resetZoomAction
[docs]
def getZoomInAction(self):
"""Action to zoom in
:rtype: actions.PlotAction
"""
return self.zoomInAction
[docs]
def getZoomOutAction(self):
"""Action to zoom out
:rtype: actions.PlotAction
"""
return self.zoomOutAction
[docs]
def getXAxisAutoScaleAction(self):
"""Action to toggle the X axis autoscale on zoom reset
:rtype: actions.PlotAction
"""
return self.xAxisAutoScaleAction
[docs]
def getYAxisAutoScaleAction(self):
"""Action to toggle the Y axis autoscale on zoom reset
:rtype: actions.PlotAction
"""
return self.yAxisAutoScaleAction
[docs]
def getXAxisLogarithmicAction(self):
"""Action to toggle logarithmic X axis
:rtype: actions.PlotAction
"""
return self.xAxisLogarithmicAction
[docs]
def getYAxisLogarithmicAction(self):
"""Action to toggle logarithmic Y axis
:rtype: actions.PlotAction
"""
return self.yAxisLogarithmicAction
[docs]
def getGridAction(self):
"""Action to toggle the grid visibility in the plot
:rtype: actions.PlotAction
"""
return self.gridAction
[docs]
def getCurveStyleAction(self):
"""Action to change curve line and markers styles
:rtype: actions.PlotAction
"""
return self.curveStyleAction
[docs]
def getColormapAction(self):
"""Action open a colormap dialog to change active image
and default colormap.
:rtype: actions.PlotAction
"""
return self.colormapAction
[docs]
def getKeepDataAspectRatioAction(self):
"""Action associated to keepDataAspectRatioButton.
Use this to change the visibility of keepDataAspectRatioButton in the
toolbar (See :meth:`QToolBar.addWidget` documentation).
:rtype: actions.PlotAction
"""
return self.keepDataAspectRatioAction
[docs]
def getYAxisInvertedAction(self):
"""Action associated to yAxisInvertedButton.
Use this to change the visibility yAxisInvertedButton in the toolbar.
(See :meth:`QToolBar.addWidget` documentation).
:rtype: actions.PlotAction
"""
return self.yAxisInvertedAction
[docs]
def getIntensityHistogramAction(self):
"""Action toggling the histogram intensity Plot widget
:rtype: actions.PlotAction
"""
return self._intensityHistoAction
[docs]
def getCopyAction(self):
"""Action to copy plot snapshot to clipboard
:rtype: actions.PlotAction
"""
return self.getOutputToolBar().getCopyAction()
[docs]
def getSaveAction(self):
"""Action to save plot
:rtype: actions.PlotAction
"""
return self.getOutputToolBar().getSaveAction()
[docs]
def getPrintAction(self):
"""Action to print plot
:rtype: actions.PlotAction
"""
return self.getOutputToolBar().getPrintAction()
[docs]
def getFitAction(self):
"""Action to fit selected curve
:rtype: actions.PlotAction
"""
return self.fitAction
[docs]
def getColorBarAction(self):
"""Action toggling the colorbar show/hide action
.. warning:: to show/hide the plot colorbar call directly the ColorBar
widget using getColorBarWidget()
:rtype: actions.PlotAction
"""
return self.colorbarAction
[docs]
class Plot1D(PlotWindow):
"""PlotWindow with tools specific for curves.
This widgets provides the plot API of :class:`.PlotWidget`.
:param parent: The parent of this widget
:param backend: The backend to use for the plot (default: matplotlib).
See :class:`.PlotWidget` for the list of supported backend.
:type backend: str or :class:`BackendBase.BackendBase`
"""
def __init__(self, parent=None, backend=None):
super(Plot1D, self).__init__(
parent=parent,
backend=backend,
resetzoom=True,
autoScale=True,
logScale=True,
grid=True,
curveStyle=True,
colormap=False,
aspectRatio=False,
yInverted=False,
copy=True,
save=True,
print_=True,
control=True,
position=True,
roi=True,
mask=False,
fit=True,
)
if parent is None:
self.setWindowTitle("Plot1D")
self.getXAxis().setLabel("X")
self.getYAxis().setLabel("Y")
action = self.getFitAction()
action.setXRangeUpdatedOnZoom(True)
action.setFittedItemUpdatedFromActiveCurve(True)
self.getInteractiveModeToolBar().getZoomModeAction().setAxesMenuEnabled(True)
[docs]
class Plot2D(PlotWindow):
"""PlotWindow with a toolbar specific for images.
This widgets provides the plot API of :~:`.PlotWidget`.
:param parent: The parent of this widget
:param backend: The backend to use for the plot (default: matplotlib).
See :class:`.PlotWidget` for the list of supported backend.
:type backend: str or :class:`BackendBase.BackendBase`
"""
def __init__(self, parent=None, backend=None):
# List of information to display at the bottom of the plot
posInfo = [
("X", lambda x, y: x),
("Y", lambda x, y: y),
("Data", WeakMethodProxy(self._getImageValue)),
("Dims", WeakMethodProxy(self._getImageDims)),
]
super(Plot2D, self).__init__(
parent=parent,
backend=backend,
resetzoom=True,
autoScale=False,
logScale=False,
grid=False,
curveStyle=False,
colormap=True,
aspectRatio=True,
yInverted=True,
copy=True,
save=True,
print_=True,
control=False,
position=posInfo,
roi=False,
mask=True,
)
if parent is None:
self.setWindowTitle("Plot2D")
self.getXAxis().setLabel("Columns")
self.getYAxis().setLabel("Rows")
if silx.config.DEFAULT_PLOT_IMAGE_Y_AXIS_ORIENTATION == "downward":
self.getYAxis().setInverted(True)
self.profile = ProfileToolBar(plot=self)
self.addToolBar(self.profile)
self.colorbarAction.setVisible(True)
self.getColorBarWidget().setVisible(True)
# Put colorbar action after colormap action
actions = self.toolBar().actions()
for action in actions:
if action is self.getColormapAction():
break
self.sigActiveImageChanged.connect(self.__activeImageChanged)
def __activeImageChanged(self, previous, legend):
"""Handle change of active image
:param Union[str,None] previous: Legend of previous active image
:param Union[str,None] legend: Legend of current active image
"""
if previous is not None:
item = self.getImage(previous)
if item is not None:
item.sigItemChanged.disconnect(self.__imageChanged)
if legend is not None:
item = self.getImage(legend)
item.sigItemChanged.connect(self.__imageChanged)
positionInfo = self.getPositionInfoWidget()
if positionInfo is not None:
positionInfo.updateInfo()
def __imageChanged(self, event):
"""Handle update of active image item
:param event: Type of changed event
"""
if event == items.ItemChangedType.DATA:
positionInfo = self.getPositionInfoWidget()
if positionInfo is not None:
positionInfo.updateInfo()
def _getImageValue(self, x, y):
"""Get status bar value of top most image at position (x, y)
:param float x: X position in plot coordinates
:param float y: Y position in plot coordinates
:return: The value at that point or '-'
"""
pickedMask = None
for picked in self.pickItems(
*self.dataToPixel(x, y, check=False),
lambda item: isinstance(item, items.ImageBase),
):
if isinstance(picked.getItem(), items.MaskImageData):
if pickedMask is None: # Use top-most if many masks
pickedMask = picked
else:
image = picked.getItem()
indices = picked.getIndices(copy=False)
if indices is not None:
row, col = indices[0][0], indices[1][0]
value = image.getData(copy=False)[row, col]
if pickedMask is not None: # Check if masked
maskItem = pickedMask.getItem()
indices = pickedMask.getIndices()
row, col = indices[0][0], indices[1][0]
if maskItem.getData(copy=False)[row, col] != 0:
return value, "Masked"
return value
return "-" # No image picked
def _getImageDims(self, *args):
activeImage = self.getActiveImage()
if activeImage is not None and activeImage.getData(copy=False) is not None:
dims = activeImage.getData(copy=False).shape[1::-1]
return "x".join(str(dim) for dim in dims)
else:
return "-"
[docs]
def getProfilePlot(self):
"""Return plot window used to display profile curve.
:return: :class:`Plot1D`
"""
return self.profile.getProfilePlot()
